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Q4KM71

- Q4KM71_RAT

UniProt

Q4KM71 - Q4KM71_RAT

Protein
Submitted name:

Splicing factor proline/glutamine rich (Polypyrimidine tract binding protein associated)

Gene

Sfpq

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 70 (01 Oct 2014)
      Sequence version 1 (02 Aug 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleic acid binding Source: InterPro
    2. nucleotide binding Source: InterPro
    3. protein binding Source: BHF-UCL

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Splicing factor proline/glutamine rich (Polypyrimidine tract binding protein associated)Imported
    Gene namesi
    Name:SfpqImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi727923. Sfpq.

    PTM / Processingi

    Proteomic databases

    PRIDEiQ4KM71.

    PTM databases

    PhosphoSiteiQ4KM71.

    Expressioni

    Gene expression databases

    GenevestigatoriQ4KM71.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000018049.

    Structurei

    3D structure databases

    ProteinModelPortaliQ4KM71.
    SMRiQ4KM71. Positions 282-366.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000231095.
    HOVERGENiHBG009801.
    InParanoidiQ4KM71.
    KOiK13219.
    PhylomeDBiQ4KM71.

    Family and domain databases

    Gene3Di3.30.70.330. 2 hits.
    InterProiIPR012975. NOPS.
    IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view]
    PfamiPF08075. NOPS. 1 hit.
    PF00076. RRM_1. 2 hits.
    [Graphical view]
    SMARTiSM00360. RRM. 2 hits.
    [Graphical view]
    PROSITEiPS50102. RRM. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q4KM71-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSRDRFRSRG GGGGGFHRRG GGGGRGGLHD FRSPPPGMGL NQNRGPMGPG    50
    PGGPKPPLPP PPPHQQQQQP PPQQPPPQQP PPHQQPPPHQ PPHQQPPPPP 100
    QESKPVVPQG PGSAPGVSTA PPPAVSAPPA NPPTTGAPPG PGPTPTPPPA 150
    VPSTAPGPPP PSTPSSGVST TPPQTGGPPP PPAGGAGPGP KQGPGPGGPK 200
    GGKMPGGPKP GGGPGMGAPG GHPKPPHRGG GEPRGGRQHH APYHQQHHQG 250
    PPPGGPGPRT EEKISDSEGF KANLSLLRRP GEKTYTQRCR LFVGNLPADI 300
    TEDEFKRLFA KYGEPGEVFI NKGKGFGFIK LESRALAEIA KAELDDTPMR 350
    GRQLRVRFAT HAAALSVRNL SPYVSNELLE EAFSQFGPIE RAVVIVDDRG 400
    RSTGKGIVEF ASKPAARKAF ERCSEGVFLL TTTPRPVIVE PLEQLDDEDG 450
    LPEKLAQKNP MYQKERETPP RFAQHGTFEY EYSQRWKSLD EMEKQQREQV 500
    EKNMKDAKDK LESEMEDAYH EHQANLLRQD LMRRQEELRR MEELHSQEMQ 550
    KRKEMQLRQE EERRRREEEM MIRQREMEEQ MRRQREESYS RMGYMDPRER 600
    DMRMGGGGTM NMGDPYGSGG QKFPPLGGGG GIGYEANPGV PPATMSGSMM 650
    GSDMRTERFG QGGAGPVGGQ GPRGMGPGTP AGYGRGREEY EGPNKKPRF 699
    Length:699
    Mass (Da):75,487
    Last modified:August 2, 2005 - v1
    Checksum:iE7BDCD191E4CE283
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC098731 mRNA. Translation: AAH98731.1.
    RefSeqiNP_001020442.1. NM_001025271.1.
    UniGeneiRn.54645.

    Genome annotation databases

    GeneIDi252855.
    KEGGirno:252855.
    UCSCiRGD:727923. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC098731 mRNA. Translation: AAH98731.1 .
    RefSeqi NP_001020442.1. NM_001025271.1.
    UniGenei Rn.54645.

    3D structure databases

    ProteinModelPortali Q4KM71.
    SMRi Q4KM71. Positions 282-366.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000018049.

    PTM databases

    PhosphoSitei Q4KM71.

    Proteomic databases

    PRIDEi Q4KM71.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 252855.
    KEGGi rno:252855.
    UCSCi RGD:727923. rat.

    Organism-specific databases

    CTDi 6421.
    RGDi 727923. Sfpq.

    Phylogenomic databases

    HOGENOMi HOG000231095.
    HOVERGENi HBG009801.
    InParanoidi Q4KM71.
    KOi K13219.
    PhylomeDBi Q4KM71.

    Miscellaneous databases

    NextBioi 623920.

    Gene expression databases

    Genevestigatori Q4KM71.

    Family and domain databases

    Gene3Di 3.30.70.330. 2 hits.
    InterProi IPR012975. NOPS.
    IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view ]
    Pfami PF08075. NOPS. 1 hit.
    PF00076. RRM_1. 2 hits.
    [Graphical view ]
    SMARTi SM00360. RRM. 2 hits.
    [Graphical view ]
    PROSITEi PS50102. RRM. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: ThymusImported.

    Entry informationi

    Entry nameiQ4KM71_RAT
    AccessioniPrimary (citable) accession number: Q4KM71
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 2, 2005
    Last sequence update: August 2, 2005
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)