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Q4KM41

- Q4KM41_RAT

UniProt

Q4KM41 - Q4KM41_RAT

Protein
Submitted name:

Ewing sarcoma breakpoint region 1

Gene

Ewsr1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 72 (01 Oct 2014)
      Sequence version 1 (02 Aug 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleic acid binding Source: InterPro
    2. nucleotide binding Source: InterPro
    3. zinc ion binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Ewing sarcoma breakpoint region 1Imported
    Gene namesi
    Name:Ewsr1Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi1307258. Ewsr1.

    Subcellular locationi

    GO - Cellular componenti

    1. Cajal body Source: RGD
    2. cytoplasm Source: RGD
    3. nucleolus Source: RGD

    PTM / Processingi

    Proteomic databases

    PRIDEiQ4KM41.

    Expressioni

    Gene expression databases

    GenevestigatoriQ4KM41.

    Structurei

    3D structure databases

    ProteinModelPortaliQ4KM41.
    SMRiQ4KM41. Positions 14-114.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000038010.
    InParanoidiQ4KM41.
    PhylomeDBiQ4KM41.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    4.10.1060.10. 1 hit.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    IPR001876. Znf_RanBP2.
    [Graphical view]
    PfamiPF00641. zf-RanBP. 1 hit.
    [Graphical view]
    SMARTiSM00360. RRM. 1 hit.
    SM00547. ZnF_RBZ. 1 hit.
    [Graphical view]
    PROSITEiPS50102. RRM. 1 hit.
    PS01358. ZF_RANBP2_1. 1 hit.
    PS50199. ZF_RANBP2_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q4KM41-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDEGPDLDLG LPIDPDEDSD NSAVYVQGLN DSVTLDDLAD FFKQCGVVKM    50
    NKRTGQPMIH IYLDKETGKP KGDATVSYED PPTAKAAVEW FDGKDFQGSK 100
    LKVSLARKKP PLNSMRGGMP PREGRGMPPP LRGGPGGPGG PGGPMGRMGG 150
    RGGDRGGFPP RGPRGSRGNP SGGGNVQHRA GDWQCPNPGC GNQNFAWRTE 200
    CNQCKAPKPE GFLPPPFPPP GGDRGRGGPG GMRGGRGGLM DRGGPGGMFR 250
    GGRGGDRGGF RGGRGMDRGG FGGGRRGGPG GPPGPLMEQM GGRRGGRGGP 300
    GKMDKGEHRQ ERRDRPY 317
    Length:317
    Mass (Da):33,075
    Last modified:August 2, 2005 - v1
    Checksum:i7ECAA044E05B1178
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC098822 mRNA. Translation: AAH98822.1.
    UniGeneiRn.52785.

    Genome annotation databases

    UCSCiRGD:1307258. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC098822 mRNA. Translation: AAH98822.1 .
    UniGenei Rn.52785.

    3D structure databases

    ProteinModelPortali Q4KM41.
    SMRi Q4KM41. Positions 14-114.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q4KM41.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi RGD:1307258. rat.

    Organism-specific databases

    RGDi 1307258. Ewsr1.

    Phylogenomic databases

    HOGENOMi HOG000038010.
    InParanoidi Q4KM41.
    PhylomeDBi Q4KM41.

    Miscellaneous databases

    NextBioi 13952278.

    Gene expression databases

    Genevestigatori Q4KM41.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    4.10.1060.10. 1 hit.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    IPR001876. Znf_RanBP2.
    [Graphical view ]
    Pfami PF00641. zf-RanBP. 1 hit.
    [Graphical view ]
    SMARTi SM00360. RRM. 1 hit.
    SM00547. ZnF_RBZ. 1 hit.
    [Graphical view ]
    PROSITEi PS50102. RRM. 1 hit.
    PS01358. ZF_RANBP2_1. 1 hit.
    PS50199. ZF_RANBP2_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: SpleenImported.

    Entry informationi

    Entry nameiQ4KM41_RAT
    AccessioniPrimary (citable) accession number: Q4KM41
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 2, 2005
    Last sequence update: August 2, 2005
    Last modified: October 1, 2014
    This is version 72 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)