Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q4KM41 (Q4KM41_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Ewing sarcoma breakpoint region 1 EMBL AAH98822.1
Gene names
Name:Ewsr1 EMBL AAH98822.1 RGD 1307258
OrganismRattus norvegicus (Rat) EMBL AAH98822.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length317 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q4KM41 [UniParc].

Last modified August 2, 2005. Version 1.
Checksum: 7ECAA044E05B1178

FASTA31733,075
        10         20         30         40         50         60 
MDEGPDLDLG LPIDPDEDSD NSAVYVQGLN DSVTLDDLAD FFKQCGVVKM NKRTGQPMIH 

        70         80         90        100        110        120 
IYLDKETGKP KGDATVSYED PPTAKAAVEW FDGKDFQGSK LKVSLARKKP PLNSMRGGMP 

       130        140        150        160        170        180 
PREGRGMPPP LRGGPGGPGG PGGPMGRMGG RGGDRGGFPP RGPRGSRGNP SGGGNVQHRA 

       190        200        210        220        230        240 
GDWQCPNPGC GNQNFAWRTE CNQCKAPKPE GFLPPPFPPP GGDRGRGGPG GMRGGRGGLM 

       250        260        270        280        290        300 
DRGGPGGMFR GGRGGDRGGF RGGRGMDRGG FGGGRRGGPG GPPGPLMEQM GGRRGGRGGP 

       310 
GKMDKGEHRQ ERRDRPY

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Spleen EMBL AAH98822.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC098822 mRNA. Translation: AAH98822.1.
IPIIPI00364603.
UniGeneRn.52785.

3D structure databases

ProteinModelPortalQ4KM41.
SMRQ4KM41. Positions 14-114.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ4KM41.

Proteomic databases

PRIDEQ4KM41.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

UCSCRGD:1307258. rat.

Organism-specific databases

RGD1307258. Ewsr1.

Phylogenomic databases

HOGENOMHOG000038010.
InParanoidQ4KM41.
OrthoDBEOG42NJ15.

Gene expression databases

ArrayExpressQ4KM41.
GenevestigatorQ4KM41.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamPF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTSM00360. RRM. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
[Graphical view]
PROSITEPS50102. RRM. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio13952278.

Entry information

Entry nameQ4KM41_RAT
AccessionPrimary (citable) accession number: Q4KM41
Entry history
Integrated into UniProtKB/TrEMBL: August 2, 2005
Last sequence update: August 2, 2005
Last modified: April 3, 2013
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info