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Protein
Submitted name:

Ewing sarcoma breakpoint region 1

Gene

Ewsr1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
  2. nucleotide binding Source: InterPro
  3. zinc ion binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Ewing sarcoma breakpoint region 1Imported
Gene namesi
Name:Ewsr1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1307258. Ewsr1.

Subcellular locationi

GO - Cellular componenti

  1. Cajal body Source: RGD
  2. cytoplasm Source: RGD
  3. nucleolus Source: RGD
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiQ4KM41.

Expressioni

Gene expression databases

ExpressionAtlasiQ4KM41. baseline.
GenevestigatoriQ4KM41.

Structurei

3D structure databases

ProteinModelPortaliQ4KM41.
SMRiQ4KM41. Positions 14-114.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000038010.
PhylomeDBiQ4KM41.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
4.10.1060.10. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
[Graphical view]
PROSITEiPS50102. RRM. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4KM41-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDEGPDLDLG LPIDPDEDSD NSAVYVQGLN DSVTLDDLAD FFKQCGVVKM
60 70 80 90 100
NKRTGQPMIH IYLDKETGKP KGDATVSYED PPTAKAAVEW FDGKDFQGSK
110 120 130 140 150
LKVSLARKKP PLNSMRGGMP PREGRGMPPP LRGGPGGPGG PGGPMGRMGG
160 170 180 190 200
RGGDRGGFPP RGPRGSRGNP SGGGNVQHRA GDWQCPNPGC GNQNFAWRTE
210 220 230 240 250
CNQCKAPKPE GFLPPPFPPP GGDRGRGGPG GMRGGRGGLM DRGGPGGMFR
260 270 280 290 300
GGRGGDRGGF RGGRGMDRGG FGGGRRGGPG GPPGPLMEQM GGRRGGRGGP
310
GKMDKGEHRQ ERRDRPY
Length:317
Mass (Da):33,075
Last modified:August 1, 2005 - v1
Checksum:i7ECAA044E05B1178
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC098822 mRNA. Translation: AAH98822.1.
UniGeneiRn.52785.

Genome annotation databases

UCSCiRGD:1307258. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC098822 mRNA. Translation: AAH98822.1.
UniGeneiRn.52785.

3D structure databases

ProteinModelPortaliQ4KM41.
SMRiQ4KM41. Positions 14-114.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ4KM41.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

UCSCiRGD:1307258. rat.

Organism-specific databases

RGDi1307258. Ewsr1.

Phylogenomic databases

HOGENOMiHOG000038010.
PhylomeDBiQ4KM41.

Miscellaneous databases

NextBioi13952278.

Gene expression databases

ExpressionAtlasiQ4KM41. baseline.
GenevestigatoriQ4KM41.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
4.10.1060.10. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
[Graphical view]
PROSITEiPS50102. RRM. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: SpleenImported.

Entry informationi

Entry nameiQ4KM41_RAT
AccessioniPrimary (citable) accession number: Q4KM41
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 2005
Last sequence update: August 1, 2005
Last modified: October 28, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.