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Q4KM41

- Q4KM41_RAT

UniProt

Q4KM41 - Q4KM41_RAT

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Protein
Submitted name:

Ewing sarcoma breakpoint region 1

Gene
Ewsr1
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
  2. nucleotide binding Source: InterPro
  3. zinc ion binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Ewing sarcoma breakpoint region 1Imported
Gene namesi
Name:Ewsr1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1307258. Ewsr1.

Subcellular locationi

GO - Cellular componenti

  1. Cajal body Source: RGD
  2. cytoplasm Source: RGD
  3. nucleolus Source: RGD
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiQ4KM41.

Expressioni

Gene expression databases

GenevestigatoriQ4KM41.

Structurei

3D structure databases

ProteinModelPortaliQ4KM41.
SMRiQ4KM41. Positions 14-114.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000038010.
InParanoidiQ4KM41.
PhylomeDBiQ4KM41.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
4.10.1060.10. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
[Graphical view]
PROSITEiPS50102. RRM. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4KM41-1 [UniParc]FASTAAdd to Basket

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MDEGPDLDLG LPIDPDEDSD NSAVYVQGLN DSVTLDDLAD FFKQCGVVKM    50
NKRTGQPMIH IYLDKETGKP KGDATVSYED PPTAKAAVEW FDGKDFQGSK 100
LKVSLARKKP PLNSMRGGMP PREGRGMPPP LRGGPGGPGG PGGPMGRMGG 150
RGGDRGGFPP RGPRGSRGNP SGGGNVQHRA GDWQCPNPGC GNQNFAWRTE 200
CNQCKAPKPE GFLPPPFPPP GGDRGRGGPG GMRGGRGGLM DRGGPGGMFR 250
GGRGGDRGGF RGGRGMDRGG FGGGRRGGPG GPPGPLMEQM GGRRGGRGGP 300
GKMDKGEHRQ ERRDRPY 317
Length:317
Mass (Da):33,075
Last modified:August 2, 2005 - v1
Checksum:i7ECAA044E05B1178
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC098822 mRNA. Translation: AAH98822.1.
UniGeneiRn.52785.

Genome annotation databases

UCSCiRGD:1307258. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC098822 mRNA. Translation: AAH98822.1 .
UniGenei Rn.52785.

3D structure databases

ProteinModelPortali Q4KM41.
SMRi Q4KM41. Positions 14-114.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q4KM41.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

UCSCi RGD:1307258. rat.

Organism-specific databases

RGDi 1307258. Ewsr1.

Phylogenomic databases

HOGENOMi HOG000038010.
InParanoidi Q4KM41.
PhylomeDBi Q4KM41.

Miscellaneous databases

NextBioi 13952278.

Gene expression databases

Genevestigatori Q4KM41.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
4.10.1060.10. 1 hit.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR001876. Znf_RanBP2.
[Graphical view ]
Pfami PF00641. zf-RanBP. 1 hit.
[Graphical view ]
SMARTi SM00360. RRM. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
[Graphical view ]
PROSITEi PS50102. RRM. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: SpleenImported.

Entry informationi

Entry nameiQ4KM41_RAT
AccessioniPrimary (citable) accession number: Q4KM41
Entry historyi
Integrated into UniProtKB/TrEMBL: August 2, 2005
Last sequence update: August 2, 2005
Last modified: July 9, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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