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Q4KM41

- Q4KM41_RAT

UniProt

Q4KM41 - Q4KM41_RAT

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Protein
Submitted name:

Ewing sarcoma breakpoint region 1

Gene

Ewsr1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
  2. nucleotide binding Source: InterPro
  3. zinc ion binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Ewing sarcoma breakpoint region 1Imported
Gene namesi
Name:Ewsr1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1307258. Ewsr1.

Subcellular locationi

GO - Cellular componenti

  1. Cajal body Source: RGD
  2. cytoplasm Source: RGD
  3. nucleolus Source: RGD
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiQ4KM41.

Expressioni

Gene expression databases

ExpressionAtlasiQ4KM41. baseline.
GenevestigatoriQ4KM41.

Structurei

3D structure databases

ProteinModelPortaliQ4KM41.
SMRiQ4KM41. Positions 14-114.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000038010.
PhylomeDBiQ4KM41.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
4.10.1060.10. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR001876. Znf_RanBP2.
[Graphical view]
PfamiPF00641. zf-RanBP. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
[Graphical view]
PROSITEiPS50102. RRM. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4KM41-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDEGPDLDLG LPIDPDEDSD NSAVYVQGLN DSVTLDDLAD FFKQCGVVKM
60 70 80 90 100
NKRTGQPMIH IYLDKETGKP KGDATVSYED PPTAKAAVEW FDGKDFQGSK
110 120 130 140 150
LKVSLARKKP PLNSMRGGMP PREGRGMPPP LRGGPGGPGG PGGPMGRMGG
160 170 180 190 200
RGGDRGGFPP RGPRGSRGNP SGGGNVQHRA GDWQCPNPGC GNQNFAWRTE
210 220 230 240 250
CNQCKAPKPE GFLPPPFPPP GGDRGRGGPG GMRGGRGGLM DRGGPGGMFR
260 270 280 290 300
GGRGGDRGGF RGGRGMDRGG FGGGRRGGPG GPPGPLMEQM GGRRGGRGGP
310
GKMDKGEHRQ ERRDRPY
Length:317
Mass (Da):33,075
Last modified:August 2, 2005 - v1
Checksum:i7ECAA044E05B1178
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC098822 mRNA. Translation: AAH98822.1.
UniGeneiRn.52785.

Genome annotation databases

UCSCiRGD:1307258. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC098822 mRNA. Translation: AAH98822.1 .
UniGenei Rn.52785.

3D structure databases

ProteinModelPortali Q4KM41.
SMRi Q4KM41. Positions 14-114.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q4KM41.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

UCSCi RGD:1307258. rat.

Organism-specific databases

RGDi 1307258. Ewsr1.

Phylogenomic databases

HOGENOMi HOG000038010.
PhylomeDBi Q4KM41.

Miscellaneous databases

NextBioi 13952278.

Gene expression databases

ExpressionAtlasi Q4KM41. baseline.
Genevestigatori Q4KM41.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
4.10.1060.10. 1 hit.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR001876. Znf_RanBP2.
[Graphical view ]
Pfami PF00641. zf-RanBP. 1 hit.
[Graphical view ]
SMARTi SM00360. RRM. 1 hit.
SM00547. ZnF_RBZ. 1 hit.
[Graphical view ]
PROSITEi PS50102. RRM. 1 hit.
PS01358. ZF_RANBP2_1. 1 hit.
PS50199. ZF_RANBP2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: SpleenImported.

Entry informationi

Entry nameiQ4KM41_RAT
AccessioniPrimary (citable) accession number: Q4KM41
Entry historyi
Integrated into UniProtKB/TrEMBL: August 2, 2005
Last sequence update: August 2, 2005
Last modified: October 29, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)