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Protein
Submitted name:

Lysine demethylase 4B

Gene

Kdm4b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Enzyme and pathway databases

ReactomeiR-RNO-3214842. HDMs demethylate histones.
R-RNO-5693565. Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks.

Names & Taxonomyi

Protein namesi
Submitted name:
Lysine demethylase 4BImported
Submitted name:
Similar to jumonji domain containing 2BImported
Gene namesi
Name:Kdm4bImported
Synonyms:LOC301128Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 9

Organism-specific databases

RGDi1588576. Kdm4b.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000049221.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 49PHD-typeInterPro annotationAdd BLAST49

Phylogenomic databases

eggNOGiENOG410IT40. Eukaryota.
COG5141. LUCA.
GeneTreeiENSGT00530000063342.
HOVERGENiHBG086744.

Family and domain databases

InterProiView protein in InterPro
IPR034732. EPHD.
IPR002999. Tudor.
SMARTiView protein in SMART
SM00333. TUDOR. 2 hits.
PROSITEiView protein in PROSITE
PS51805. EPHD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4KM27-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRVSGACIQ CSYEHCSTSF HVTCAHAAGV LMEPDDWPYV VSITCLKHRA
60 70 80 90 100
SGAGGQLLRT VSLGQIVITK NRNGLYYRCR VIGTTAQTFY EVNFDDGSYS
110 120 130 140 150
DNLYPESITS RDCLRLGPPP EGELVELRWT DGNLYRARFI SMATSLIYQV
160 170 180 190 200
EFEDGSQLTV KRADIFTLEE ELPKRVRSRL SLSTGTPQEP SFSGDGVKAA
210 220 230 240
KRPRVATVLA TTTEDTGRSP EYLAFMESLL QAQGQPGAPF
Length:240
Mass (Da):26,534
Last modified:August 2, 2005 - v1
Checksum:i38D0DE8771BFB42F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07066527 Genomic DNA. No translation available.
AABR07066528 Genomic DNA. No translation available.
BC098860 mRNA. Translation: AAH98860.1.
UniGeneiRn.219581.

Genome annotation databases

EnsembliENSRNOT00000091450; ENSRNOP00000073251; ENSRNOG00000049221.

Similar proteinsi

Entry informationi

Entry nameiQ4KM27_RAT
AccessioniPrimary (citable) accession number: Q4KM27
Entry historyiIntegrated into UniProtKB/TrEMBL: August 2, 2005
Last sequence update: August 2, 2005
Last modified: September 27, 2017
This is version 67 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported