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Q4KM27

- Q4KM27_RAT

UniProt

Q4KM27 - Q4KM27_RAT

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Protein
Submitted name:

Similar to jumonji domain containing 2B

Gene

Kdm4b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Functioni

Enzyme and pathway databases

ReactomeiREACT_244236. HDMs demethylate histones.

Names & Taxonomyi

Protein namesi
Submitted name:
Similar to jumonji domain containing 2BImported
Gene namesi
Name:Kdm4bImported
Synonyms:LOC301128Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1588576. Kdm4b.

Subcellular locationi

GO - Cellular componenti

  1. focal adhesion Source: Ensembl
  2. nucleus Source: Ensembl
Complete GO annotation...

Expressioni

Gene expression databases

ExpressionAtlasiQ4KM27. baseline.
GenevestigatoriQ4KM27.

Structurei

3D structure databases

ProteinModelPortaliQ4KM27.
SMRiQ4KM27. Positions 58-173.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOVERGENiHBG086744.
PhylomeDBiQ4KM27.

Family and domain databases

InterProiIPR002999. Tudor.
[Graphical view]
SMARTiSM00333. TUDOR. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4KM27-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKRVSGACIQ CSYEHCSTSF HVTCAHAAGV LMEPDDWPYV VSITCLKHRA
60 70 80 90 100
SGAGGQLLRT VSLGQIVITK NRNGLYYRCR VIGTTAQTFY EVNFDDGSYS
110 120 130 140 150
DNLYPESITS RDCLRLGPPP EGELVELRWT DGNLYRARFI SMATSLIYQV
160 170 180 190 200
EFEDGSQLTV KRADIFTLEE ELPKRVRSRL SLSTGTPQEP SFSGDGVKAA
210 220 230 240
KRPRVATVLA TTTEDTGRSP EYLAFMESLL QAQGQPGAPF
Length:240
Mass (Da):26,534
Last modified:August 2, 2005 - v1
Checksum:i38D0DE8771BFB42F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC098860 mRNA. Translation: AAH98860.1.
UniGeneiRn.219581.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC098860 mRNA. Translation: AAH98860.1 .
UniGenei Rn.219581.

3D structure databases

ProteinModelPortali Q4KM27.
SMRi Q4KM27. Positions 58-173.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

RGDi 1588576. Kdm4b.

Phylogenomic databases

HOVERGENi HBG086744.
PhylomeDBi Q4KM27.

Enzyme and pathway databases

Reactomei REACT_244236. HDMs demethylate histones.

Gene expression databases

ExpressionAtlasi Q4KM27. baseline.
Genevestigatori Q4KM27.

Family and domain databases

InterProi IPR002999. Tudor.
[Graphical view ]
SMARTi SM00333. TUDOR. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: ThymusImported.

Entry informationi

Entry nameiQ4KM27_RAT
AccessioniPrimary (citable) accession number: Q4KM27
Entry historyi
Integrated into UniProtKB/TrEMBL: August 2, 2005
Last sequence update: August 2, 2005
Last modified: November 26, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)