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Protein
Submitted name:

Splicing factor 3a, subunit 3

Gene

Sf3a3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-RNO-72163. mRNA Splicing - Major Pathway.

Names & Taxonomyi

Protein namesi
Submitted name:
Splicing factor 3a, subunit 3Imported
Gene namesi
Name:Sf3a3Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 5

Organism-specific databases

RGDi1308726. Sf3a3.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000007629.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000010373.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini406 – 437Matrin-typeInterPro annotationAdd BLAST32

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili342 – 375Sequence analysisAdd BLAST34

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2636. Eukaryota.
COG5188. LUCA.
GeneTreeiENSGT00530000063402.
HOGENOMiHOG000160935.
HOVERGENiHBG054452.
KOiK12827.
OMAiEFPCEIC.
OrthoDBiEOG091G059G.
TreeFamiTF315227.

Family and domain databases

InterProiView protein in InterPro
IPR024598. DUF3449.
IPR000690. Matrin/U1-C_Znf_C2H2.
IPR031776. SF3A3.
IPR031774. SF3A3_dom.
IPR021966. SF3a60_bindingd.
PANTHERiPTHR12786:SF2. PTHR12786:SF2. 1 hit.
PfamiView protein in Pfam
PF11931. DUF3449. 1 hit.
PF16837. SF3A3. 1 hit.
PF12108. SF3a60_bindingd. 1 hit.
PROSITEiView protein in PROSITE
PS50171. ZF_MATRIN. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4KLI7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
METILEQQRR YHEEKERLMD VMAKEMLTKK STLRDQINSD HRTRAMQDRY
60 70 80 90 100
MEVSGNLRDL YDDKDGLRKE ELNAISGPNE FAEFYNRLKQ IKEFHRKHPN
110 120 130 140 150
EICVPMSVEF EELLKARENP SEEAQNLVEF TDEEGYGRYL DLHDCYLKYI
160 170 180 190 200
NLKASEKLDY ITYLSIFDQL FDIPKERKNA EYKRYLEMLL EYLQDYTDRV
210 220 230 240 250
KPLQDQNELF GKIQTDFEKK WDNGTFPGWP KETSSALTHA GAHLDLSAFS
260 270 280 290 300
SWEELASLGL DRLKSALLAL GLKCGGTLEE RAQRLFSTKG KSLESLDTSL
310 320 330 340 350
FAKNPKSKGT KRDTERNKDI AFLEAQIYEY VEILGEQRQL THENVQRKQA
360 370 380 390 400
RTGEEREEEE EEQISESESE DEENEIIYNP KNLPLGWDGK PIPYWLYKLH
410 420 430 440 450
GLNINYNCEI CGNYTYRGPK AFQRHFAEWR HAHGMRCLGI PNTAHFANVT
460 470 480 490 500
QIEDAVSLWA KLKLQKASER WQPDTEEEYE DSSGNVVNKK TYEDLKRQGL

L
Length:501
Mass (Da):58,842
Last modified:August 2, 2005 - v1
Checksum:i46EE0928FC8271D7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC142187 Genomic DNA. No translation available.
BC099183 mRNA. Translation: AAH99183.1.
RefSeqiNP_001020869.1. NM_001025698.1.
UniGeneiRn.16732.

Genome annotation databases

EnsembliENSRNOT00000010373; ENSRNOP00000010373; ENSRNOG00000007629.
GeneIDi313583.
KEGGirno:313583.

Similar proteinsi

Entry informationi

Entry nameiQ4KLI7_RAT
AccessioniPrimary (citable) accession number: Q4KLI7
Entry historyiIntegrated into UniProtKB/TrEMBL: August 2, 2005
Last sequence update: August 2, 2005
Last modified: November 22, 2017
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported