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Protein

KH homology domain-containing protein 1C

Gene

Khdc1c

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
KH homology domain-containing protein 1C
Gene namesi
Name:Khdc1c
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 1

Organism-specific databases

MGIiMGI:3583007. Khdc1c.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 166166KH homology domain-containing protein 1CPRO_0000311432Add
BLAST

Proteomic databases

PaxDbiQ4KL78.

Expressioni

Gene expression databases

BgeeiENSMUSG00000041722.
CleanExiMM_KHDC1C.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000068792.

Structurei

3D structure databases

ProteinModelPortaliQ4KL78.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini19 – 7860KH; atypicalAdd
BLAST

Sequence similaritiesi

Belongs to the KHDC1 family.Curated
Contains 1 KH domain.Curated

Phylogenomic databases

eggNOGiENOG410J7N5. Eukaryota.
ENOG4111ED1. LUCA.
GeneTreeiENSGT00390000008575.
HOGENOMiHOG000037926.
HOVERGENiHBG056258.
InParanoidiQ4KL78.
OMAiHFSRFPL.
OrthoDBiEOG091G0ZT4.
PhylomeDBiQ4KL78.
TreeFamiTF337964.

Family and domain databases

CDDicd12795. FILIA_N_like. 1 hit.
InterProiIPR031952. MOEP19_KH-like.
[Graphical view]
PfamiPF16005. MOEP19. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4KL78-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDLRRKGWW NVPDYFHSPL VFDMEEDKED YIFGPHDEYL HTLEVHSNTL
60 70 80 90 100
IQLERWFTPT GQTRVTVVGP LKARLWVMDM IRKVGSKNNL DQIKGKMMLL
110 120 130 140 150
QIRDHPLRDR DLELHPESGS SLWITTMNDT TFVEVPHFSR FPLTVAWLFC
160
GFVRILGIHN FADLHW
Length:166
Mass (Da):19,664
Last modified:August 2, 2005 - v1
Checksum:iBB4FC5E375AE45F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC099381 mRNA. Translation: AAH99381.1.
CCDSiCCDS48228.1.
RefSeqiNP_001029076.1. NM_001033904.1.
UniGeneiMm.26006.
Mm.484599.

Genome annotation databases

EnsembliENSMUST00000070223; ENSMUSP00000068792; ENSMUSG00000041722.
GeneIDi433278.
KEGGimmu:433278.
UCSCiuc007alo.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC099381 mRNA. Translation: AAH99381.1.
CCDSiCCDS48228.1.
RefSeqiNP_001029076.1. NM_001033904.1.
UniGeneiMm.26006.
Mm.484599.

3D structure databases

ProteinModelPortaliQ4KL78.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000068792.

Proteomic databases

PaxDbiQ4KL78.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000070223; ENSMUSP00000068792; ENSMUSG00000041722.
GeneIDi433278.
KEGGimmu:433278.
UCSCiuc007alo.1. mouse.

Organism-specific databases

CTDi433278.
MGIiMGI:3583007. Khdc1c.

Phylogenomic databases

eggNOGiENOG410J7N5. Eukaryota.
ENOG4111ED1. LUCA.
GeneTreeiENSGT00390000008575.
HOGENOMiHOG000037926.
HOVERGENiHBG056258.
InParanoidiQ4KL78.
OMAiHFSRFPL.
OrthoDBiEOG091G0ZT4.
PhylomeDBiQ4KL78.
TreeFamiTF337964.

Miscellaneous databases

PROiQ4KL78.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000041722.
CleanExiMM_KHDC1C.

Family and domain databases

CDDicd12795. FILIA_N_like. 1 hit.
InterProiIPR031952. MOEP19_KH-like.
[Graphical view]
PfamiPF16005. MOEP19. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiKHD1C_MOUSE
AccessioniPrimary (citable) accession number: Q4KL78
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: August 2, 2005
Last modified: September 7, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.