Q4KAS3 (Q4KAS3_PSEF5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional regulator, GntR family/amidohydrolase family protein EMBL AAY92824.1

Gene names

Ordered Locus Names:

PFL_3557 EMBL AAY92824.1

Organism

Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) [Complete proteome] [HAMAP] EMBL AAY92824.1

Taxonomic identifier

220664 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas fluorescens group › Pseudomonas protegens

Protein attributes

Sequence length	536 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH gntR-type DNA-binding domain. RuleBase RU000706 SAAS SAAS027376

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000706 SAAS SAAS027376
Ligand	DNA-binding SAAS SAAS027376 RuleBase RU000706
Molecular function	Hydrolase EMBL AAY92824.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW hydrolase activity Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q4KAS3 [UniParc]. Last modified August 2, 2005. Version 1. Checksum: 7315E9546CCA16C3	FASTA	536	59,548
	10 20 30 40 50 60 MTIKAIGRRD HFSVEIFRHL ESEIREGRLR PGDRIPTESR LAEAFAVSRN VVREAVARLN 70 80 90 100 110 120 SAGLVVSRQG LGVFVATEAN QSSFRITQEE LTDSTKLRQL YELRLDLEVA AAAMAARRRS 130 140 150 160 170 180 LSQLNKIEAA LDTLRASIQN RQDMVEHSLQ FKRAIADATG NEYFRNFIIF LCSHVYEAAL 190 200 210 220 230 240 LENHLVRSSD LGETLLAEHQ AIFEAIRLGD PDLARRVTWQ QIINSAERNG LRGLQGWEIT 250 260 270 280 290 300 RMSSLGETYA PQCAGPAPEP RTLPRTLPDG ACDCHFHVFG DENGQPFSPH RSYTPPPAPL 310 320 330 340 350 360 EAFQRVQKTL GLSRGVIVQP SVYGADNSTT LAALKEAGSA FRGVVVIDAD TDTETLWAMH 370 380 390 400 410 420 RLGVRGVRVN LIFKSGVEVS DVAALAEKVA PLGWHLQLLI DITEFADLYE TVASLPVAVV 430 440 450 460 470 480 IDHMGHMPTS CGLGHPGFTD LLRLLKEGRV WVKLSGAYRF TASKDFPYDD VTPYARALIE 490 500 510 520 530 ANPNRLLWAS DWPHPCIPVP MPNDASLLEM LFNWVENDDA LIKQILVDNP AKLYGF

References

[1]

"Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5." Paulsen I.T., Press C.M., Ravel J., Kobayashi D.Y., Myers G.S.A., Mavrodi D.V., DeBoy R.T., Seshadri R., Ren Q., Madupu R., Dodson R.J., Durkin A.S., Brinkac L.M., Daugherty S.C., Sullivan S.A., Rosovitz M.J., Gwinn M.L., Zhou L. , Schneider D.J., Cartinhour S.W., Nelson W.C., Weidman J., Watkins K., Tran K., Khouri H., Pierson E.A., Pierson L.S. III, Thomashow L.S., Loper J.E. Nat. Biotechnol. 23:873-878(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Pf-5 / ATCC BAA-477.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000076 Genomic DNA. Translation: AAY92824.1.
RefSeq	YP_260660.1. NC_004129.6.
3D structure databases
ProteinModelPortal	Q4KAS3.
ModBase	Search...
Protein-protein interaction databases
STRING	220664.PFL_3557.
Protocols and materials databases
DNASU	3475376.
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAY92824; AAY92824; PFL_3557.
GeneID	3475376.
KEGG	pfl:PFL_3557.
PATRIC	19876467. VBIPseFlu72549_3636.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2186.
KO	K07046.
Enzyme and pathway databases
BioCyc	PFLU220664:GIX8-3571-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit. 1.20.120.530. 1 hit.
InterPro	IPR006992. Amidohydro_2. IPR027376. FadR/GntR_C. IPR011711. GntR_C. IPR000524. Tscrpt_reg_HTH_GntR. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04909. Amidohydro_2. 1 hit. PF07729. FCD. 1 hit. PF00392. GntR. 1 hit. [Graphical view]
PRINTS	PR00035. HTHGNTR.
SMART	SM00895. FCD. 1 hit. SM00345. HTH_GNTR. 1 hit. [Graphical view]
PROSITE	PS50949. HTH_GNTR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q4KAS3_PSEF5

Accession

Primary (citable) accession number: Q4KAS3

Entry history

Integrated into UniProtKB/TrEMBL:	August 2, 2005
Last sequence update:	August 2, 2005
Last modified:	May 29, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)