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Q4K7V5 (Q4K7V5_PSEF5) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 2 HAMAP MF_00163
Short name=PDF 2 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 2 HAMAP MF_00163
Gene names
Name:def_1 EMBL AAY93841.1
Synonyms:def2 HAMAP MF_00163
Ordered Locus Names:PFL_4594
OrganismPseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) [Complete proteome] [HAMAP]
Taxonomic identifier220664 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length179 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1441 By similarity HAMAP MF_00163
Metal binding1011Iron By similarity HAMAP MF_00163
Metal binding1431Iron By similarity HAMAP MF_00163
Metal binding1471Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
Q4K7V5 [UniParc].

Last modified August 2, 2005. Version 1.
Checksum: 08538C1E77B19170

FASTA17920,139
        10         20         30         40         50         60 
MIREILKMGD ERLLRIAPPV PPEMFDSPEL WELIDDMFQT MESVGGVGLA APQIGVDLQL 

        70         80         90        100        110        120 
VIFGFEHSER YPEAEAVPQT ILINPLITPL SPVLEEGWEG CLSVPGLRGA VQRYQHIRYE 

       130        140        150        160        170 
GFDPRGEPIV RVASGFHARV VQHECDHLIG RLYPSRISDF SKFGFTEVLF PDLDPNADE

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000076 Genomic DNA. Translation: AAY93841.1.
RefSeqYP_261678.1. NC_004129.6.

3D structure databases

ProteinModelPortalQ4K7V5.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ4K7V5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3478709.
GenomeReviewsGene locus PFL_4594 in contig CP000076_GR.
KEGGpfl:PFL_4594.
NMPDRfig|220664.3.peg.5164.
PATRIC19878626. VBIPseFlu72549_4698.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0242.
HOGENOMHBG665227.
OMAIRYEGFD.
PhylomeDBQ4K7V5.
ProtClustDBPRK12846.

Enzyme and pathway databases

BioCycPFLU220664:PFL_4594-MONOMER.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ4K7V5_PSEF5
AccessionPrimary (citable) accession number: Q4K7V5
Entry history
Integrated into UniProtKB/TrEMBL: August 2, 2005
Last sequence update: August 2, 2005
Last modified: January 25, 2012
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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