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Q4FZE6 (Q4FZE6_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Ribosomal protein S7 transcript variant A EMBL ABY59727.1
Gene names
Name:Rps7 EMBL AAH99605.1 MGI 1333818
Synonyms:Rps7A EMBL ABY59727.1
OrganismMus musculus (Mouse) EMBL AAH99605.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length194 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q4FZE6 [UniParc].

Last modified August 30, 2005. Version 1.
Checksum: E21089929CC061E9

FASTA19422,127
        10         20         30         40         50         60 
MFSSSAKIVK PNGEKPDEFE SGISQALLEL EMNSDLKAQL RELNITAAKE IEVGGGRKAI 

        70         80         90        100        110        120 
IIFVPVPQLK SFQKIQVRLV RELEKKFSGK HVVFIAQRRI LPKPTRKSRT KNKQKRPRSR 

       130        140        150        160        170        180 
TLTAVHDAIL EDLVFPSEIV GKRIRVKLDG SRLIKVHLDK AQQNNVEHKV ETFSGVYKKL 

       190 
TGKDVNFEFP EFQL 

« Hide

References

« Hide 'large scale' references
[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22564.1 and NOD EMBL BAE41268.1.
Tissue: Lung EMBL BAE38568.1, Mullerian duct includes surrounding region EMBL BAE22564.1, Thymus EMBL BAE41268.1 and Whole body EMBL BAE35928.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22564.1 and NOD EMBL BAE41268.1.
Tissue: Lung EMBL BAE38568.1, Mullerian duct includes surrounding region EMBL BAE22564.1, Thymus EMBL BAE41268.1 and Whole body EMBL BAE35928.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22564.1 and NOD EMBL BAE41268.1.
Tissue: Lung EMBL BAE38568.1, Mullerian duct includes surrounding region EMBL BAE22564.1, Thymus EMBL BAE41268.1 and Whole body EMBL BAE35928.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22564.1 and NOD EMBL BAE41268.1.
Tissue: Lung EMBL BAE38568.1, Mullerian duct includes surrounding region EMBL BAE22564.1, Thymus EMBL BAE41268.1 and Whole body EMBL BAE35928.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22564.1 and NOD EMBL BAE41268.1.
Tissue: Lung EMBL BAE38568.1, Mullerian duct includes surrounding region EMBL BAE22564.1, Thymus EMBL BAE41268.1 and Whole body EMBL BAE35928.1.
[6]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N-3 EMBL AAI00398.1.
Tissue: Mammary gland EMBL AAH99605.1 and Mammary tumor. MMTV-LTR/INT3 model. 5 month old mouse. Taken by biopsy. EMBL AAI00398.1.
[7]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22564.1.
Tissue: Mullerian duct includes surrounding region EMBL BAE22564.1.
[8]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE35928.1 and NOD EMBL BAE41268.1.
Tissue: Lung EMBL BAE38568.1, Thymus EMBL BAE41268.1 and Whole body EMBL BAE35928.1.
[9]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22564.1 and NOD EMBL BAE41268.1.
Tissue: Lung EMBL BAE38568.1, Mullerian duct includes surrounding region EMBL BAE22564.1, Thymus EMBL BAE41268.1 and Whole body EMBL BAE35928.1.
[10]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22564.1 and NOD EMBL BAE41268.1.
Tissue: Lung EMBL BAE38568.1, Mullerian duct includes surrounding region EMBL BAE22564.1, Thymus EMBL BAE41268.1 and Whole body EMBL BAE35928.1.
[11]"Isolation and characterization of the mouse ribosomal protein S7 transcript variant A (mRPS7A)."
Duan J., Wang H.
Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C3H/He EMBL ABY59727.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC099605 mRNA. Translation: AAH99605.1.
BC100397 mRNA. Translation: AAI00398.1.
EU349428 mRNA. Translation: ABY59727.1.
AK135520 mRNA. Translation: BAE22564.1.
AK160632 mRNA. Translation: BAE35928.1.
AK166096 mRNA. Translation: BAE38568.1.
AK169636 mRNA. Translation: BAE41268.1.
RefSeqNP_035430.1. NM_011300.3.
UniGeneMm.279839.
Mm.371579.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID20115.
KEGGmmu:20115.

Organism-specific databases

CTD6201.
MGIMGI:1333818. Rps7.

Phylogenomic databases

eggNOGNOG280542.
GeneTreeENSGT00390000014122.
HOVERGENHBG001698.
InParanoidQ4FZE6.
KOK02993.
OMAIEVGHGK.

Gene expression databases

GenevestigatorQ4FZE6.

Family and domain databases

InterProIPR000554. Ribosomal_S7e.
[Graphical view]
PANTHERPTHR11278. PTHR11278. 1 hit.
PfamPF01251. Ribosomal_S7e. 1 hit.
[Graphical view]
PROSITEPS00948. RIBOSOMAL_S7E. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio297619.
SOURCESearch...

Entry information

Entry nameQ4FZE6_MOUSE
AccessionPrimary (citable) accession number: Q4FZE6
Entry history
Integrated into UniProtKB/TrEMBL: August 30, 2005
Last sequence update: August 30, 2005
Last modified: April 16, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)