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Q4FZE6

- Q4FZE6_MOUSE

UniProt

Q4FZE6 - Q4FZE6_MOUSE

Protein
Submitted name:

Ribosomal protein S7

Gene

Rps7

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 80 (01 Oct 2014)
      Sequence version 1 (30 Aug 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. cell differentiation Source: MGI
    2. cytoplasmic translation Source: RefGenome
    3. neural tube closure Source: MGI
    4. ribosomal small subunit biogenesis Source: RefGenome
    5. rRNA processing Source: RefGenome

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Ribosomal protein S7Imported
    Submitted name:
    Ribosomal protein S7 transcript variant AImported
    Gene namesi
    Name:Rps7Imported
    Synonyms:Rps7AImported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:1333818. Rps7.

    Subcellular locationi

    GO - Cellular componenti

    1. 90S preribosome Source: RefGenome
    2. cytosolic small ribosomal subunit Source: RefGenome
    3. ribonucleoprotein complex Source: MGI
    4. small-subunit processome Source: RefGenome

    Expressioni

    Gene expression databases

    GenevestigatoriQ4FZE6.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG280542.
    GeneTreeiENSGT00390000014122.
    HOVERGENiHBG001698.
    InParanoidiQ4FZE6.
    KOiK02993.
    OMAiIEVGHGK.

    Family and domain databases

    InterProiIPR000554. Ribosomal_S7e.
    [Graphical view]
    PANTHERiPTHR11278. PTHR11278. 1 hit.
    PfamiPF01251. Ribosomal_S7e. 1 hit.
    [Graphical view]
    PROSITEiPS00948. RIBOSOMAL_S7E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q4FZE6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFSSSAKIVK PNGEKPDEFE SGISQALLEL EMNSDLKAQL RELNITAAKE    50
    IEVGGGRKAI IIFVPVPQLK SFQKIQVRLV RELEKKFSGK HVVFIAQRRI 100
    LPKPTRKSRT KNKQKRPRSR TLTAVHDAIL EDLVFPSEIV GKRIRVKLDG 150
    SRLIKVHLDK AQQNNVEHKV ETFSGVYKKL TGKDVNFEFP EFQL 194
    Length:194
    Mass (Da):22,127
    Last modified:August 30, 2005 - v1
    Checksum:iE21089929CC061E9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC099605 mRNA. Translation: AAH99605.1.
    BC100397 mRNA. Translation: AAI00398.1.
    EU349428 mRNA. Translation: ABY59727.1.
    AK135520 mRNA. Translation: BAE22564.1.
    AK160632 mRNA. Translation: BAE35928.1.
    AK166096 mRNA. Translation: BAE38568.1.
    AK169636 mRNA. Translation: BAE41268.1.
    RefSeqiNP_035430.1. NM_011300.3.
    UniGeneiMm.279839.
    Mm.371579.

    Genome annotation databases

    GeneIDi20115.
    KEGGimmu:20115.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC099605 mRNA. Translation: AAH99605.1 .
    BC100397 mRNA. Translation: AAI00398.1 .
    EU349428 mRNA. Translation: ABY59727.1 .
    AK135520 mRNA. Translation: BAE22564.1 .
    AK160632 mRNA. Translation: BAE35928.1 .
    AK166096 mRNA. Translation: BAE38568.1 .
    AK169636 mRNA. Translation: BAE41268.1 .
    RefSeqi NP_035430.1. NM_011300.3.
    UniGenei Mm.279839.
    Mm.371579.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 20115.
    KEGGi mmu:20115.

    Organism-specific databases

    CTDi 6201.
    MGIi MGI:1333818. Rps7.

    Phylogenomic databases

    eggNOGi NOG280542.
    GeneTreei ENSGT00390000014122.
    HOVERGENi HBG001698.
    InParanoidi Q4FZE6.
    KOi K02993.
    OMAi IEVGHGK.

    Miscellaneous databases

    NextBioi 297619.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q4FZE6.

    Family and domain databases

    InterProi IPR000554. Ribosomal_S7e.
    [Graphical view ]
    PANTHERi PTHR11278. PTHR11278. 1 hit.
    Pfami PF01251. Ribosomal_S7e. 1 hit.
    [Graphical view ]
    PROSITEi PS00948. RIBOSOMAL_S7E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported and NODImported.
      Tissue: LungImported, Mullerian duct includes surrounding regionImported, ThymusImported and Whole bodyImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported and NODImported.
      Tissue: LungImported, Mullerian duct includes surrounding regionImported, ThymusImported and Whole bodyImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported and NODImported.
      Tissue: LungImported, Mullerian duct includes surrounding regionImported, ThymusImported and Whole bodyImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported and NODImported.
      Tissue: LungImported, Mullerian duct includes surrounding regionImported, ThymusImported and Whole bodyImported.
    5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported and NODImported.
      Tissue: LungImported, Mullerian duct includes surrounding regionImported, ThymusImported and Whole bodyImported.
    6. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: FVB/N-3Imported.
      Tissue: Mammary glandImported and Mammary tumor. MMTV-LTR/INT3 model. 5 month old mouse. Taken by biopsy.Imported.
    7. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Mullerian duct includes surrounding regionImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported and NODImported.
      Tissue: LungImported, ThymusImported and Whole bodyImported.
    9. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported and NODImported.
      Tissue: LungImported, Mullerian duct includes surrounding regionImported, ThymusImported and Whole bodyImported.
    10. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported and NODImported.
      Tissue: LungImported, Mullerian duct includes surrounding regionImported, ThymusImported and Whole bodyImported.
    11. "Isolation and characterization of the mouse ribosomal protein S7 transcript variant A (mRPS7A)."
      Duan J., Wang H.
      Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C3H/HeImported.

    Entry informationi

    Entry nameiQ4FZE6_MOUSE
    AccessioniPrimary (citable) accession number: Q4FZE6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 30, 2005
    Last sequence update: August 30, 2005
    Last modified: October 1, 2014
    This is version 80 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)