Q4FTS6 (Q4FTS6_PSYA2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Choline dehydrogenase EMBL AAZ18582.1
EC=1.1.99.1 EMBL AAZ18582.1

Gene names

Name:	betA EMBL AAZ18582.1
Ordered Locus Names:	Psyc_0728

Organism

Psychrobacter arcticus (strain DSM 17307 / 273-4) [Complete proteome] [HAMAP] EMBL AAZ18582.1

Taxonomic identifier

259536 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Moraxellaceae › Psychrobacter

Protein attributes

Sequence length	566 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS007867
Catalytic activity	Choline + acceptor = betaine aldehyde + reduced acceptor. SAAS SAAS007867
Cofactor	FAD By similarity. SAAS SAAS007867
Pathway	Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. SAAS SAAS007867

Ontologies

Keywords
Ligand	FAD SAAS SAAS011533 Flavoprotein SAAS SAAS011533
Molecular function	Oxidoreductase SAAS SAAS007867 EMBL AAZ18582.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine betaine biosynthetic process from choline Inferred from electronic annotation. Source: InterPro
Molecular function	choline dehydrogenase activity Inferred from electronic annotation. Source: EC flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q4FTS6 [UniParc]. Last modified August 30, 2005. Version 1. Checksum: 6AF6978539B1FF4C	FASTA	566	62,424
	10 20 30 40 50 60 MSSTLPEFDY IIVGAGSAGN VLATRLTEDD DINVLLLEAG RPDHRLDFRT QMPAALAMPL 70 80 90 100 110 120 QGTTYNWGYK TDPEPYMNNR VMDCGRGKGL GGSSLINGMC YIRGNALDFD DWAKIEGLED 130 140 150 160 170 180 WTYSDCLPYF KKLENRDAGE NDYHGVGGPV EMTTSKPGVN PLFQAMIEAG VQAGYPSTED 190 200 210 220 230 240 LNGYQQEGFG PMDRFVTPNG RRASTARGYL DQAKPRSNLT ILTGALTDVI LFDGKRAIGV 250 260 270 280 290 300 KVEHGGQTKN FYASREVIVS SGAIASPQLL QRSGIGPEQW LKELGVPVVL DLPGVGNNLQ 310 320 330 340 350 360 DHLELYMQYE CTQPVSIAPA NKWWNKPAIG AEWLFKGTGL GASNQFEGGG FIRTDETFTH 370 380 390 400 410 420 PNIQYHFLPL AVRYDGRSAS DSHSFQAHVG SLRSPSRGRV KLTSRDPSAH PSILFNYMSH 430 440 450 460 470 480 DQDWREFRAA MRITREIMHQ PALDPYRGRA ISPSEDLVTD EQLDDYVREN SETAYHPSCT 490 500 510 520 530 540 CAMGEHKDAV VNGEGLVHGI ESLRVVDASI MPNIISGNLN ATTIMMAEKI VDKMRGVQLP 550 560 RSTVDYYVAN GAPLRAEPMR DYSPAQ

References

[1]

"The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth." Ayala-del-Rio H.L., Chain P.S., Grzymski J.J., Ponder M.A., Ivanova N., Bergholz P.W., Di Bartolo G., Hauser L., Land M., Bakermans C., Rodrigues D., Klappenbach J., Zarka D., Larimer F., Richardson P., Murray A., Thomashow M., Tiedje J.M. Appl. Environ. Microbiol. 76:2304-2312(2010) [PubMed: 20154119] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17307 / 273-4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000082 Genomic DNA. Translation: AAZ18582.1.
RefSeq	YP_264016.1. NC_007204.1.
3D structure databases
ProteinModelPortal	Q4FTS6.
ModBase	Search...
Protein-protein interaction databases
STRING	Q4FTS6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3514574.
GenomeReviews	Gene locus Psyc_0728 in contig CP000082_GR.
KEGG	par:Psyc_0728.
NMPDR	fig|259536.4.peg.1327.
PATRIC	23055887. VBIPsyArc98534_0865.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2303.
HOGENOM	HBG734713.
OMA	EISPGAH.
PhylomeDB	Q4FTS6.
ProtClustDB	PRK02106.
Enzyme and pathway databases
BioCyc	PARC259536:PSYC_0728-MONOMER.
Family and domain databases
InterPro	IPR011533. Choline_dehydrogenase. IPR012132. GMC_OxRdtase. IPR000172. GMC_OxRdtase_N. IPR007867. GMC_OxRtase_C. [Graphical view]
KO	K00108.
Pfam	PF05199. GMC_oxred_C. 1 hit. PF00732. GMC_oxred_N. 1 hit. [Graphical view]
PIRSF	PIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMs	TIGR01810. BetA. 1 hit.
PROSITE	PS00623. GMC_OXRED_1. 1 hit. PS00624. GMC_OXRED_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q4FTS6_PSYA2

Accession

Primary (citable) accession number: Q4FTS6

Entry history

Integrated into UniProtKB/TrEMBL:	August 30, 2005
Last sequence update:	August 30, 2005
Last modified:	January 25, 2012
This is version 58 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)