Q4FKD4 (Q4FKD4_TRYB2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
60S ribosomal protein L21E, putative EMBL CAJ17065.1

Submitted name:
Ribosomal protein L21E (60S), putative EMBL EAN79048.1

Gene names

ORF Names:

Tb11.0880 EMBL CAJ17065.1, Tb11.50.0005 EMBL EAN79048.1

Organism

Trypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome] EMBL CAJ17065.1

Taxonomic identifier

999953 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Euglenozoa › Kinetoplastida › Trypanosomatidae › Trypanosoma › Trypanozoon › Trypanosoma brucei › Trypanosoma brucei brucei

Protein attributes

Sequence length	159 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein EMBL CAJ17065.1
Technical term	3D-structure PDB 3ZF7 Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q4FKD4 [UniParc]. Last modified August 30, 2005. Version 1. Checksum: 41267A63D959A5BC	FASTA	159	18,002
	10 20 30 40 50 60 MVHSHGYKCG TRHLFAKKFR KHGVPSVSTI LTNFKVGDYV DVVADAAVRA GMPHKYYHGR 70 80 90 100 110 120 TGIVWNVTPR GVGVIINKPV RNRTVRKRIC VRFEHVRKSR CQEAFKQKLK DLEAFRAAKK 130 140 150 AGTPLPPKKV STRNGGFVCP KKVEVLARRT ADYEAMIPY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Comparative genomics of trypanosomatid parasitic protozoa." El-Sayed N.M.A., Myler P.J., Blandin G., Berriman M., Crabtree J., Aggarwal G., Caler E., Renauld H., Worthey E.A., Hertz-Fowler C., Ghedin E., Peacock C., Bartholomeu D.C., Haas B.J., Tran A.-N., Wortman J.R., Alsmark U.C.M., Angiuoli S. , Anupama A., Badger J., Bringaud F., Cadag E., Carlton J.M., Cerqueira G.C., Creasy T., Delcher A.L., Djikeng A., Embley T.M., Hauser C., Ivens A.C., Kummerfeld S.K., Pereira-Leal J.B., Nilsson D., Peterson J., Salzberg S.L., Shallom J., Silva J.C., Sundaram J., Westenberger S., White O., Melville S.E., Donelson J.E., Andersson B., Stuart K.D., Hall N. Science 309:404-409(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: 927/4 GUTat10.1 EMBL EAN79048.1.
[2]	"The genome of the African trypanosome Trypanosoma brucei." Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A. Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 927/4 GUTat10.1 EMBL EAN79048.1.
[3]	Hamlin N., Brooks K., Cherevach I., Churcher C., Goodhead I., Hauser H., Mungall K., Sanders M., Simmonds M., Walker D., White B., Berriman M., Hertz-Fowler C., Renauld H., Bohme U., Arrowsmith C., Atkin R., Chillingworth T. , Cronin A., Davies R., Fraser A., Hance Z., Jagels K., Johnson D., Larke N., Leech V., Lord A., MacLeod A., Moule S., Quail M., Norbertczak H., Rabbinowitsch E., Rajandream M., Reitter C., Sharp S., Whitehead S., Woodward J., Hall N., Melville S.and.Barrell.B. Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: 927/4 GUTat10.1 EMBL CAJ17065.1.
[4]	"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome." Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J. Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract] Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CT009753 Genomic DNA. Translation: CAJ17065.1.
CH464491 Genomic DNA. Translation: EAN79048.1.

RefSeq

XP_828160.1. XM_823067.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3ZF7	electron microscopy	5.57	U	1-159	[»]

ModBase

Search...

Protein-protein interaction databases

STRING

5691.Tb11.50.0005.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblProtists

EAN79048; EAN79048; Tb11.50.0005.

GeneID

3665532.

KEGG

tbr:Tb11.50.0005.

Phylogenomic databases

eggNOG

COG2139.

HOGENOM

HOG000194513.

KO

K02889.

ProtClustDB

PTZ00189.

Family and domain databases

InterPro

IPR001147. Ribosomal_L21e.
IPR018259. Ribosomal_L21e_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]

PANTHER

PTHR20981. PTHR20981. 1 hit.

Pfam

PF01157. Ribosomal_L21e. 1 hit.
[Graphical view]

SUPFAM

SSF50104. Transl_SH3_like. 1 hit.

PROSITE

PS01171. RIBOSOMAL_L21E. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q4FKD4_TRYB2

Accession

Primary (citable) accession number: Q4FKD4
Secondary accession number(s): Q387I3

Entry history

Integrated into UniProtKB/TrEMBL:	August 30, 2005
Last sequence update:	August 30, 2005
Last modified:	May 1, 2013
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)