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Q4FKD4 (Q4FKD4_TRYB2) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Ribosomal protein L21E (60S), putative EMBL EAN79048.1
Gene names
ORF Names:Tb11.0880 EMBL CAJ17065.1, Tb11.50.0005 EMBL EAN79048.1
OrganismTrypanosoma brucei brucei (strain 927/4 GUTat10.1) [Reference proteome] EMBL CAJ17065.1
Taxonomic identifier999953 [NCBI]
Taxonomic lineageEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma

Protein attributes

Sequence length159 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein EMBL CAJ17065.1
   Technical term3D-structure PDB 3ZF7
Complete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q4FKD4 [UniParc].

Last modified August 30, 2005. Version 1.
Checksum: 41267A63D959A5BC

FASTA15918,002
        10         20         30         40         50         60 
MVHSHGYKCG TRHLFAKKFR KHGVPSVSTI LTNFKVGDYV DVVADAAVRA GMPHKYYHGR 

        70         80         90        100        110        120 
TGIVWNVTPR GVGVIINKPV RNRTVRKRIC VRFEHVRKSR CQEAFKQKLK DLEAFRAAKK 

       130        140        150 
AGTPLPPKKV STRNGGFVCP KKVEVLARRT ADYEAMIPY 

« Hide

References

« Hide 'large scale' references
[1]"Comparative genomics of trypanosomatid parasitic protozoa."
El-Sayed N.M.A., Myler P.J., Blandin G., Berriman M., Crabtree J., Aggarwal G., Caler E., Renauld H., Worthey E.A., Hertz-Fowler C., Ghedin E., Peacock C., Bartholomeu D.C., Haas B.J., Tran A.-N., Wortman J.R., Alsmark U.C.M., Angiuoli S. expand/collapse author list , Anupama A., Badger J., Bringaud F., Cadag E., Carlton J.M., Cerqueira G.C., Creasy T., Delcher A.L., Djikeng A., Embley T.M., Hauser C., Ivens A.C., Kummerfeld S.K., Pereira-Leal J.B., Nilsson D., Peterson J., Salzberg S.L., Shallom J., Silva J.C., Sundaram J., Westenberger S., White O., Melville S.E., Donelson J.E., Andersson B., Stuart K.D., Hall N.
Science 309:404-409(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 927/4 GUTat10.1 EMBL EAN79048.1.
[2]"The genome of the African trypanosome Trypanosoma brucei."
Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M. expand/collapse author list , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 927/4 GUTat10.1 EMBL EAN79048.1.
[3]Hamlin N., Brooks K., Cherevach I., Churcher C., Goodhead I., Hauser H., Mungall K., Sanders M., Simmonds M., Walker D., White B., Berriman M., Hertz-Fowler C., Renauld H., Bohme U., Arrowsmith C., Atkin R., Chillingworth T. expand/collapse author list , Cronin A., Davies R., Fraser A., Hance Z., Jagels K., Johnson D., Larke N., Leech V., Lord A., MacLeod A., Moule S., Quail M., Norbertczak H., Rabbinowitsch E., Rajandream M., Reitter C., Sharp S., Whitehead S., Woodward J., Hall N., Melville S.and.Barrell.B.
Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: 927/4 GUTat10.1 EMBL CAJ17065.1.
[4]"High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CT009753 Genomic DNA. Translation: CAJ17065.1.
CH464491 Genomic DNA. Translation: EAN79048.1.
RefSeqXP_828160.1. XM_823067.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZF7electron microscopy5.57U1-159[»]
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING5691.Tb11.50.0005.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsEAN79048; EAN79048; Tb11.50.0005.
GeneID3665532.
KEGGtbr:Tb11.50.0005.

Phylogenomic databases

eggNOGCOG2139.
HOGENOMHOG000194513.
KOK02889.
ProtClustDBPTZ00189.

Family and domain databases

Gene3D2.30.30.70. 1 hit.
InterProIPR001147. Ribosomal_L21e.
IPR018259. Ribosomal_L21e_CS.
IPR008991. Translation_prot_SH3-like.
[Graphical view]
PANTHERPTHR20981. PTHR20981. 1 hit.
PfamPF01157. Ribosomal_L21e. 1 hit.
[Graphical view]
SUPFAMSSF50104. SSF50104. 1 hit.
PROSITEPS01171. RIBOSOMAL_L21E. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ4FKD4_TRYB2
AccessionPrimary (citable) accession number: Q4FKD4
Secondary accession number(s): Q387I3
Entry history
Integrated into UniProtKB/TrEMBL: August 30, 2005
Last sequence update: August 30, 2005
Last modified: March 19, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)