Q4A041 (SDHD_STAS1) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 39.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Probable D-serine dehydratase EC=4.3.1.18 Alternative name(s): D-serine deaminase Short name=DSD | ||||
| Gene names |
| ||||
| Organism | Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 342451 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Firmicutes › Bacillales › Staphylococcus |
Protein attributes
| Sequence length | 433 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Catalytic activity | D-serine = pyruvate + NH3. HAMAP MF_01030 |
| Cofactor | Pyridoxal phosphate By similarity. HAMAP MF_01030 |
| Sequence similarities | Belongs to the serine/threonine dehydratase family. DsdA subfamily. |
Ontologies
| Keywords | |
|---|---|
| Ligand | Pyridoxal phosphate |
| Molecular function | Lyase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | D-amino acid metabolic process Inferred from electronic annotation. Source: InterPro |
| Molecular function | D-serine ammonia-lyase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 433 | 433 | Probable D-serine dehydratase HAMAP MF_01030 | PRO_0000291745 | |||||
Amino acid modifications | |||||||||
| Modified residue | 112 | 1 | N6-(pyridoxal phosphate)lysine By similarity | ||||||
Sequences
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References
| [1] | "Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection." Kuroda M., Yamashita A., Hirakawa H., Kumano M., Morikawa K., Higashide M., Maruyama A., Inose Y., Matoba K., Toh H., Kuhara S., Hattori M., Ohta T. Proc. Natl. Acad. Sci. U.S.A. 102:13272-13277(2005) [PubMed: 16135568] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 15305 / DSM 20229. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AP008934 Genomic DNA. Translation: BAE17577.1. |
| RefSeq | YP_300522.1. NC_007350.1. |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q4A041. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblBacteria | EBSTAT00000047574; EBSTAP00000045943; EBSTAG00000047571. |
| GeneID | 3616180. |
| GenomeReviews | Gene locus SSP0432 in contig AP008934_GR. |
| KEGG | ssp:SSP0432. |
| NMPDR | fig|342451.4.peg.340. |
| PATRIC | 19622353. VBIStaSap90642_0437. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG3048. |
| HOGENOM | HBG288722. |
| OMA | RFAPYIA. |
| PhylomeDB | Q4A041. |
| ProtClustDB | PRK02991. |
Enzyme and pathway databases | |
| BioCyc | SSAP342451:SSP0432-MONOMER. |
Family and domain databases | |
| HAMAP | MF_01030. D-Ser_dehydrat. [Tree] |
| InterPro | IPR011780. D_Ser_am_lyase. IPR001926. PyrdxlP-dep_enz_bsu. IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS. [Graphical view] |
| KO | K01753. |
| PANTHER | PTHR10314:SF9. D_Ser_am_lyase. 1 hit. |
| Pfam | PF00291. PALP. 1 hit. [Graphical view] |
| SUPFAM | SSF53686. PyrdxlP-dep_enz_bsu. 1 hit. |
| TIGRFAMs | TIGR02035. D_Ser_am_lyase. 1 hit. |
| PROSITE | PS00165. DEHYDRATASE_SER_THR. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | SDHD_STAS1 | ||||||||
| Accession | Primary (citable) accession number: Q4A041 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| SIMILARITY comments Index of protein domains and families |

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