Skip Header

 
Contribute Send feedback
Read comments (0) or add your own

Reviewed, UniProtKB/Swiss-Prot Q4A041 (SDHD_STAS1)

Last modified June 16, 2009. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Probable D-serine dehydratase
    EC=4.3.1.18
Alternative name(s):
    D-serine deaminase
      Short name=DSD
Gene names
Name: dsdA
Ordered Locus Names: SSP0432
OrganismStaphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) [Complete proteome] [HAMAP]
Taxonomic identifier342451 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacillalesStaphylococcus

Protein attributes

Sequence length433 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Catalytic activity

D-serine = pyruvate + NH3. HAMAP MF_01030

Cofactor

Pyridoxal phosphate By similarity.

Sequence similarities

Belongs to the serine/threonine dehydratase family. DsdA subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 433433Probable D-serine dehydratase HAMAP MF_01030
PRO_0000291745

Amino acid modifications

Modified residue1121N6-(pyridoxal phosphate)lysine By similarity

Sequences

Sequence LengthMass (Da)Tools
Q4A041-1 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: FFE3D605DD45A407

FASTA43348,000
        10         20         30         40         50         60 
MNDLATLKQD FPLIDSMQNY KPIFWENPNF RKPASLTFTL KDMEDAAQRL ERFSSYISTV 

        70         80         90        100        110        120 
FPETENNHGL IESPLKHIPF MQNTLTNIES LPIEGKLWLK CDSHLAISGS IKARGGIYEV 

       130        140        150        160        170        180 
LKLAETIAMQ DGDLKETADY RVLAEQKYQD LFSKYNVAVG STGNLGLSIG IMSAKLGFKV 

       190        200        210        220        230        240 
TVHMSTDARQ WKKDLLRSRG VEVIEHQSDY QYAVAEGRKH AENDPTCHFV DDEGSSDLFL 

       250        260        270        280        290        300 
GYTVAALRLK AQLAAENIQI DAEHPLFVYI PCGVGGGPGG VTFGLKQVFG EHVYCIFTEP 

       310        320        330        340        350        360 
THAPCMLLGM MTQLHDKISV KDIGIDGNTD ADGLAVARPS RLVGQIMNTL LYGIQTVSDS 

       370        380        390        400        410        420 
EMYRYLYLLS EKEDIFIEPS AASGFAGIKS AITLAKQQGI QMNQANHIVW ATGGNMVPKE 

       430 
EMLKYVNHGK SCL 

« Hide

References

[1]"Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection."
Kuroda M., Yamashita A., Hirakawa H., Kumano M., Morikawa K., Higashide M., Maruyama A., Inose Y., Matoba K., Toh H., Kuhara S., Hattori M., Ohta T.
Proc. Natl. Acad. Sci. U.S.A. 102:13272-13277(2005) [PubMed: 16135568] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

AP008934 Genomic DNA. Translation: BAE17577.1.
RefSeqYP_300522.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID3616180.
GenomeReviewsGene locus SSP0432 in contig AP008934_GR.
KEGGssp:SSP0432.
NMPDRfig|342451.4.peg.340.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ4A041.
OMAQ4A041. DHPLFVY.

Enzyme and pathway databases

BioCycSSAP342451:SSP0432-MON.

Family and domain databases

HAMAPMF_01030.
[Tree]
InterProIPR011780. D_Ser_am_lyase.
IPR001926. PyrdxlP-dep_enz_bsu.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
[Graphical view]
PANTHERPTHR10314:SF9. D_Ser_am_lyase. 1 hit.
PfamPF00291. PALP. 1 hit.
[Graphical view]
TIGRFAMsTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSDHD_STAS1
AccessionPrimary (citable) accession number: Q4A041
Entry history
Integrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: September 13, 2005
Last modified: June 16, 2009
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents