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Q49DS8 (Q49DS8_9HIV1) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:env EMBL AAY20506.1
OrganismHuman immunodeficiency virus 1 EMBL AAY20506.1
Taxonomic identifier11676 [NCBI]
Taxonomic lineageVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusPrimate lentivirus group
Virus hostHomo sapiens (Human) [TaxID: 9606]

Protein attributes

Sequence length208 AA.
Sequence statusFragment.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Amino acid modifications

Glycosylation51N-linked (GlcNAc...) PDB 2NXY
Glycosylation181N-linked (GlcNAc...) PDB 2NXY
Glycosylation241N-linked (GlcNAc...) PDB 2NXY
Glycosylation1111N-linked (GlcNAc...) PDB 2NXY
Glycosylation1171N-linked (GlcNAc...) PDB 2NXY
Glycosylation1611N-linked (GlcNAc...) PDB 2NXY

Experimental info

Non-terminal residue11 EMBL AAY20506.1
Non-terminal residue2081 EMBL AAY20506.1

Sequences

Sequence LengthMass (Da)Tools
Q49DS8 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: EEEDDE925D7E6C39

FASTA20823,212
        10         20         30         40         50         60 
IRSENITNNA KIIIVQLNES VIINCTRPYN NTRRSTHVGP GQALFTTEII GDIRQAHCNI 

        70         80         90        100        110        120 
SGTSWNKTLQ QVTAKLKNLF NKTIVFKSPS GGDPEITTHS FNCGGEFFYC NTTNLFNNRE 

       130        140        150        160        170        180 
TVNNRTITLP CRIKQIINMW QGVGKAMYAP PIAGRINCSS NITGLLLTRD GGNGSQQNET 

       190        200 
FRPGGGDMRD NWRSELYKYK VVKIEPLG 

« Hide

References

[1]"Transmission of cell-free and cell-associated HIV-1 through breast-feeding."
Koulinska I.N., Villamor E., Chaplin B., Msamanga G., Fawzi W., Renjifo B., Essex M.
J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 41:93-99(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: TZMDE732-11-10 EMBL AAY20506.1.
[2]"Risk of HIV-1 transmission by breastfeeding among mothers infected with recombinant and non-recombinant HIV-1 genotypes."
Koulinska I.N., Villamor E., Msamanga G., Fawzi W., Blackard J., Renjifo B., Essex M.
Virus Res. 120:191-198(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: TZMDE732-11-10 EMBL AAY20506.1.
[3]"Structural definition of a conserved neutralization epitope on HIV-1 gp120."
Zhou T., Xu L., Dey B., Hessell A.J., Van Ryk D., Xiang S.H., Yang X., Zhang M.Y., Zwick M.B., Arthos J., Burton D.R., Dimitrov D.S., Sodroski J., Wyatt R., Nabel G.J., Kwong P.D.
Nature 445:732-737(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 1-205, GLYCOSYLATION AT ASN-5; ASN-18; ASN-24; ASN-111; ASN-117 AND ASN-161.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY932129 Genomic DNA. Translation: AAY20506.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2NXYX-ray2.00A1-205[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D2.170.40.20. 1 hit.
InterProIPR000777. HIV1_GP160.
[Graphical view]
PfamPF00516. GP120. 1 hit.
[Graphical view]
SUPFAMSSF56502. SSF56502. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ49DS8.

Entry information

Entry nameQ49DS8_9HIV1
AccessionPrimary (citable) accession number: Q49DS8
Entry history
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: March 19, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)