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Protein
Submitted name:

Intelectin 1 (Galactofuranose binding)

Gene

Itln1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Intelectin 1 (Galactofuranose binding)Imported
Gene namesi
Name:Itln1Imported
Synonyms:LOC498284Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1561048. Itln1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 313294Sequence analysisPRO_5004234967Add
BLAST

Proteomic databases

PaxDbiQ499T8.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000006196.

Structurei

3D structure databases

ProteinModelPortaliQ499T8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini32 – 8251Fibrinogen C-terminalInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains fibrinogen C-terminal domain.SAAS annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410IGEB. Eukaryota.
ENOG4110R6N. LUCA.
HOGENOMiHOG000026788.
HOVERGENiHBG052157.
KOiK17527.
PhylomeDBiQ499T8.

Family and domain databases

Gene3Di3.90.215.10. 1 hit.
InterProiIPR014716. Fibrinogen_a/b/g_C_1.
IPR002181. Fibrinogen_a/b/g_C_dom.
[Graphical view]
PfamiPF00147. Fibrinogen_C. 1 hit.
[Graphical view]
SUPFAMiSSF56496. SSF56496. 1 hit.
PROSITEiPS51406. FIBRINOGEN_C_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q499T8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTQLGFLLFL IVATRGGSAA KEDLETNKGT HSFFDSLSRS CKEIKEENTG
60 70 80 90 100
AQDGLYFLRT ENGVIYQTFC DMTTAGGGWT LVASVHENNM GGKCTVGDRW
110 120 130 140 150
SSQQGNRADY PEGDGNWANY NTFGSAEGAT SDDYKNPGYF DIQAENLGIW
160 170 180 190 200
HVPNNSPLHS WRNSSLLRYR TFTGFLQHLG HNLFGLYQKY PVKYGEGKCW
210 220 230 240 250
TDNGPALPVV YDFGDAQKTA SYYSPYGQKE FTAGFVQFRV YNNERAASAL
260 270 280 290 300
CAGMKVTGCN SEAHCIGGGG FFPEGNPLQC GDFGAFDWNG YGTHIGYSSS
310
REITEAAVLL FYR
Length:313
Mass (Da):34,497
Last modified:September 13, 2005 - v1
Checksum:i0CB80496D1603D04
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC099766 mRNA. Translation: AAH99766.1.
RefSeqiNP_001030118.1. NM_001034946.1.
UniGeneiRn.137849.

Genome annotation databases

GeneIDi498284.
KEGGirno:498284.
UCSCiRGD:1561048. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC099766 mRNA. Translation: AAH99766.1.
RefSeqiNP_001030118.1. NM_001034946.1.
UniGeneiRn.137849.

3D structure databases

ProteinModelPortaliQ499T8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000006196.

Proteomic databases

PaxDbiQ499T8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi498284.
KEGGirno:498284.
UCSCiRGD:1561048. rat.

Organism-specific databases

CTDi55600.
RGDi1561048. Itln1.

Phylogenomic databases

eggNOGiENOG410IGEB. Eukaryota.
ENOG4110R6N. LUCA.
HOGENOMiHOG000026788.
HOVERGENiHBG052157.
KOiK17527.
PhylomeDBiQ499T8.

Family and domain databases

Gene3Di3.90.215.10. 1 hit.
InterProiIPR014716. Fibrinogen_a/b/g_C_1.
IPR002181. Fibrinogen_a/b/g_C_dom.
[Graphical view]
PfamiPF00147. Fibrinogen_C. 1 hit.
[Graphical view]
SUPFAMiSSF56496. SSF56496. 1 hit.
PROSITEiPS51406. FIBRINOGEN_C_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: ProstateImported.

Entry informationi

Entry nameiQ499T8_RAT
AccessioniPrimary (citable) accession number: Q499T8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: June 8, 2016
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.