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Unreviewed, UniProtKB/TrEMBL Q498T0 (Q498T0_RAT)

Last modified November 24, 2009. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

Names and origin

Protein namesSubmitted name:
    Snta1 protein EMBL AAI00087.1
Gene names
Name: Snta1 EMBL AAI00087.1 RGD 1307068
OrganismRattus norvegicus (Rat) EMBL AAI00087.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length301 AA.
Sequence statusFragment.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Sequence similarities

Contains 2 PH domains. RuleBase RU003350V0

Binary interactions

With

Entry

#Exp.

IntAct

Notes

Nos1apO549601EBI-780251,EBI-780358
PTPRNQ168491EBI-780251,EBI-728153From a different organism.
PtprnQ632591EBI-780251,EBI-780223
UtrnO551471EBI-780251,EBI-780380

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AAI00087.1

Sequences

Sequence LengthMass (Da)Tools
Q498T0-1 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: 5EEDED08FAF051F0

FASTA30132,808
        10         20         30         40         50         60 
QPRNLNEAKH VSLKMAYVSR RCTPTDPEPR YLEICAADGQ DTLFLRAKDE ASARSWAGAI 

        70         80         90        100        110        120 
QAQISTFIPW VKDELQALLT ATGTAGSQDI KQIGWLTEQL PSGGTAPTLA LLTEKELLLY 

       130        140        150        160        170        180 
CSLPQTREAL SRPARTAPLI ATRLVHSGPS KGSVPYDAEL SFALRTGTRH GVDTHLFSVE 

       190        200        210        220        230        240 
SPQELAAWTR QLVDGCHRAA EGVQEVSTAC TWNGRPCNLS VHIDKGFTLW AAEPGATRAV 

       250        260        270        280        290        300 
LLRQPFEKLQ MSSDDGMSLL FLDFGGAEGE IQLDLHSCPK TMVFIIHSFL SAKVTRLGLL 


A 

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Liver EMBL AAI00087.1.

Cross-references

Sequence databases

BC100086 mRNA. Translation: AAI00087.1.
IPIIPI00914283.
UniGeneRn.139656

3D structure databases

SMRQ498T0. Positions 1-66.
ModBaseSearch...

Protein-protein interaction databases

IntActQ498T0. 4 interactions.
STRINGQ498T0.

PTM databases

PhosphoSiteQ498T0.

Genome annotation databases

EnsemblENSRNOT00000021715; ENSRNOP00000021715; ENSRNOG00000016062; Rattus norvegicus. [Genome view]

Phylogenomic databases

HOVERGENQ498T0.
PhylomeDBQ498T0.

Gene expression databases

ArrayExpressQ498T0.
GenevestigatorQ498T0.

Family and domain databases

InterProIPR001849. Pleckstrin_homology.
IPR015482. Syntrophin.
[Graphical view]
PANTHERPTHR10554. Syntrophin. 1 hit.
PfamPF00169. PH. 1 hit.
[Graphical view]
SMARTSM00233. PH. 1 hit.
[Graphical view]
PROSITEPS50003. PH_DOMAIN. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ498T0_RAT
AccessionPrimary (citable) accession number: Q498T0
Entry history
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: November 24, 2009
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information