Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

TRMT1-like protein

Gene

Trmt1l

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

May play a role in motor coordination and exploratory behavior.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri177 – 199C2H2-typeAdd BLAST23

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionMethyltransferase, RNA-binding, Transferase, tRNA-binding
Biological processBehavior, tRNA processing
LigandMetal-binding, S-adenosyl-L-methionine, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
TRMT1-like protein (EC:2.1.1.-)
Gene namesi
Name:Trmt1l
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 13

Organism-specific databases

RGDi1307890 Trmt1l

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003175721 – 723TRMT1-like proteinAdd BLAST723

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei23PhosphothreonineBy similarity1
Modified residuei61PhosphoserineBy similarity1
Cross-linki576Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei603PhosphoserineBy similarity1

Keywords - PTMi

Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbiQ496Z9
PRIDEiQ496Z9

PTM databases

iPTMnetiQ496Z9
PhosphoSitePlusiQ496Z9

Expressioni

Gene expression databases

BgeeiENSRNOG00000002580
GenevisibleiQ496Z9 RN

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003517

Structurei

3D structure databases

ProteinModelPortaliQ496Z9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini220 – 679Trm1 methyltransferasePROSITE-ProRule annotationAdd BLAST460

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri177 – 199C2H2-typeAdd BLAST23

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1253 Eukaryota
COG1867 LUCA
GeneTreeiENSGT00530000063646
HOGENOMiHOG000154681
HOVERGENiHBG057055
InParanoidiQ496Z9
OMAiIFESECT
OrthoDBiEOG091G0QDC
PhylomeDBiQ496Z9

Family and domain databases

InterProiView protein in InterPro
IPR029063 SAM-dependent_MTases
IPR002905 Trm1
IPR013087 Znf_C2H2_type
PANTHERiPTHR10631 PTHR10631, 1 hit
PfamiView protein in Pfam
PF02005 TRM, 2 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 2 hits
SUPFAMiSSF53335 SSF53335, 2 hits
PROSITEiView protein in PROSITE
PS51626 SAM_MT_TRM1, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 1 hit

Sequencei

Sequence statusi: Complete.

Q496Z9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENMAEEELL PQEKEEAQVR VPTPDSAPVP APAADTALDS APTPDSAPAP
60 70 80 90 100
ALAPAPAPAL SPSLASVPEE AESKRHISIQ RRLADLEKLA FGTEGDVDSA
110 120 130 140 150
SSLNSDNLEN IQTCPLCPKE KFRAYSSHKL RRHLQNLHWK ISVEFEGSRM
160 170 180 190 200
CICHLACRPV KPTIVGEQIS SKLGAHYHCI ICSATITRRT DMLGHVKRHV
210 220 230 240 250
NKGETKSRYI SASTAKSSNE VLKETDTDIQ VFPNYSIPQK TDSYFNPKMK
260 270 280 290 300
LNRQIIFCTL AALAEERKPL ECLDAFGATG IMGLQWAKHL GNAVKVTIND
310 320 330 340 350
LNENSVTLIQ KNCHLNKLKV VVDSEEKEEG DGLEDCSTAG DIQVTRMDAN
360 370 380 390 400
VLMHLRSFDF IHLDPFGTSV NYLDSAFRNV RNLGIVSVTS TDISSLYAKA
410 420 430 440 450
QHVARRHYGC NIVRTEYYKE LAARIVVAAV ARAAARCNKG VEVLFAVALE
460 470 480 490 500
HFVLVVVRVL RGPTSADETA KKIQYLIHCQ WCEERIFQKD GNMVEENPYK
510 520 530 540 550
QLPCNCHGSM PGKTAIELGP LWSSSLFNTG FLKRMLFESI HHGLDDIQPL
560 570 580 590 600
IKTLIFESEC TPQSQCSVHA PSNTNKQEEN GVFVKTTDDT TIDIYSAQGK
610 620 630 640 650
RKSNEMAINV AKKQKTDAST AHPPFYYNIH RHSIKGMNMP KLKKFLCCLS
660 670 680 690 700
QAGFRVSRTH FDPMGIRTDA SLTQFKSILL KYSTPTYTGG QSEGQVPAPE
710 720
DTVTDPVELS VNDKAEVSGC RRW
Length:723
Mass (Da):80,184
Last modified:September 13, 2005 - v1
Checksum:i59451370C44BB9E9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC100650 mRNA Translation: AAI00651.1
RefSeqiNP_001032269.1, NM_001037192.1
UniGeneiRn.16683

Genome annotation databases

EnsembliENSRNOT00000003517; ENSRNOP00000003517; ENSRNOG00000002580
GeneIDi304851
KEGGirno:304851
UCSCiRGD:1307890 rat

Similar proteinsi

Entry informationi

Entry nameiTRM1L_RAT
AccessioniPrimary (citable) accession number: Q496Z9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: September 13, 2005
Last modified: November 22, 2017
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome