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Protein

TRMT1-like protein

Gene

Trmt1l

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in motor coordination and exploratory behavior.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri177 – 19923C2H2-typeAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Methyltransferase, Transferase

Keywords - Biological processi

Behavior, tRNA processing

Keywords - Ligandi

Metal-binding, RNA-binding, S-adenosyl-L-methionine, tRNA-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
TRMT1-like protein (EC:2.1.1.-)
Gene namesi
Name:Trmt1l
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 13

Organism-specific databases

RGDi1307890. Trmt1l.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 723723TRMT1-like proteinPRO_0000317572Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei61 – 611PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ496Z9.
PRIDEiQ496Z9.

PTM databases

iPTMnetiQ496Z9.
PhosphoSiteiQ496Z9.

Expressioni

Gene expression databases

GenevisibleiQ496Z9. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003517.

Structurei

3D structure databases

ProteinModelPortaliQ496Z9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini220 – 679460Trm1 methyltransferasePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.PROSITE-ProRule annotation
Contains 1 C2H2-type zinc finger.Curated
Contains 1 Trm1 methyltransferase domain.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri177 – 19923C2H2-typeAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1253. Eukaryota.
COG1867. LUCA.
GeneTreeiENSGT00530000063646.
HOGENOMiHOG000154681.
HOVERGENiHBG057055.
InParanoidiQ496Z9.
OMAiRHISIQR.
OrthoDBiEOG7CCBQR.
PhylomeDBiQ496Z9.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
InterProiIPR029063. SAM-dependent_MTases.
IPR002905. Trm1.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
PANTHERiPTHR10631. PTHR10631. 2 hits.
PfamiPF02005. TRM. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 2 hits.
PROSITEiPS51626. SAM_MT_TRM1. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q496Z9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENMAEEELL PQEKEEAQVR VPTPDSAPVP APAADTALDS APTPDSAPAP
60 70 80 90 100
ALAPAPAPAL SPSLASVPEE AESKRHISIQ RRLADLEKLA FGTEGDVDSA
110 120 130 140 150
SSLNSDNLEN IQTCPLCPKE KFRAYSSHKL RRHLQNLHWK ISVEFEGSRM
160 170 180 190 200
CICHLACRPV KPTIVGEQIS SKLGAHYHCI ICSATITRRT DMLGHVKRHV
210 220 230 240 250
NKGETKSRYI SASTAKSSNE VLKETDTDIQ VFPNYSIPQK TDSYFNPKMK
260 270 280 290 300
LNRQIIFCTL AALAEERKPL ECLDAFGATG IMGLQWAKHL GNAVKVTIND
310 320 330 340 350
LNENSVTLIQ KNCHLNKLKV VVDSEEKEEG DGLEDCSTAG DIQVTRMDAN
360 370 380 390 400
VLMHLRSFDF IHLDPFGTSV NYLDSAFRNV RNLGIVSVTS TDISSLYAKA
410 420 430 440 450
QHVARRHYGC NIVRTEYYKE LAARIVVAAV ARAAARCNKG VEVLFAVALE
460 470 480 490 500
HFVLVVVRVL RGPTSADETA KKIQYLIHCQ WCEERIFQKD GNMVEENPYK
510 520 530 540 550
QLPCNCHGSM PGKTAIELGP LWSSSLFNTG FLKRMLFESI HHGLDDIQPL
560 570 580 590 600
IKTLIFESEC TPQSQCSVHA PSNTNKQEEN GVFVKTTDDT TIDIYSAQGK
610 620 630 640 650
RKSNEMAINV AKKQKTDAST AHPPFYYNIH RHSIKGMNMP KLKKFLCCLS
660 670 680 690 700
QAGFRVSRTH FDPMGIRTDA SLTQFKSILL KYSTPTYTGG QSEGQVPAPE
710 720
DTVTDPVELS VNDKAEVSGC RRW
Length:723
Mass (Da):80,184
Last modified:September 13, 2005 - v1
Checksum:i59451370C44BB9E9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC100650 mRNA. Translation: AAI00651.1.
RefSeqiNP_001032269.1. NM_001037192.1.
UniGeneiRn.16683.

Genome annotation databases

EnsembliENSRNOT00000003517; ENSRNOP00000003517; ENSRNOG00000002580.
GeneIDi304851.
KEGGirno:304851.
UCSCiRGD:1307890. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC100650 mRNA. Translation: AAI00651.1.
RefSeqiNP_001032269.1. NM_001037192.1.
UniGeneiRn.16683.

3D structure databases

ProteinModelPortaliQ496Z9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003517.

PTM databases

iPTMnetiQ496Z9.
PhosphoSiteiQ496Z9.

Proteomic databases

PaxDbiQ496Z9.
PRIDEiQ496Z9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000003517; ENSRNOP00000003517; ENSRNOG00000002580.
GeneIDi304851.
KEGGirno:304851.
UCSCiRGD:1307890. rat.

Organism-specific databases

CTDi81627.
RGDi1307890. Trmt1l.

Phylogenomic databases

eggNOGiKOG1253. Eukaryota.
COG1867. LUCA.
GeneTreeiENSGT00530000063646.
HOGENOMiHOG000154681.
HOVERGENiHBG057055.
InParanoidiQ496Z9.
OMAiRHISIQR.
OrthoDBiEOG7CCBQR.
PhylomeDBiQ496Z9.

Miscellaneous databases

PROiQ496Z9.

Gene expression databases

GenevisibleiQ496Z9. RN.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
InterProiIPR029063. SAM-dependent_MTases.
IPR002905. Trm1.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
[Graphical view]
PANTHERiPTHR10631. PTHR10631. 2 hits.
PfamiPF02005. TRM. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 2 hits.
PROSITEiPS51626. SAM_MT_TRM1. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Prostate.

Entry informationi

Entry nameiTRM1L_RAT
AccessioniPrimary (citable) accession number: Q496Z9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: September 13, 2005
Last modified: June 8, 2016
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.