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Protein
Submitted name:

At3g06170

Gene

At3g06170

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
At3g06170Imported
Submitted name:
Serinc-domain containing serine and sphingolipid biosynthesis proteinImported
Gene namesi
Ordered Locus Names:At3g06170Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 3

Organism-specific databases

TAIRiAT3G06170.

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

Expressioni

Gene expression databases

ExpressionAtlasiQ494Q0. baseline and differential.
GenevestigatoriQ494Q0.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G06170.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ494Q0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG308011.
HOGENOMiHOG000165463.
OMAiHIPWINA.
PhylomeDBiQ494Q0.

Family and domain databases

InterProiIPR005016. TDE1/TMS.
[Graphical view]
PANTHERiPTHR10383. PTHR10383. 1 hit.
PfamiPF03348. Serinc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q494Q0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MACCLASCCA SATCGLCSSV ASGISRKSAR IAYCGLFGAS LVVSWILRET
60 70 80 90 100
GAPLLEKLPW INTSDSYTKE WYQQQAVLRV SFGNFLFFAI YALIMIGVKD
110 120 130 140 150
QNDRRDSWHH GGWGLKMIVW FLLVVLMFFV PNVIVSLYGT LSKFGAGAFL
160 170 180 190 200
LVQVVLLLDA THNWNDSWVE KDEKKWYIAL LVISIVCYIA TYTFSGILFI
210 220 230 240 250
WFNPSGQDCG LNVFFIVMPM ILAFVFAIIA LHPAVNGSLL PASVISVYCA
260 270 280 290 300
YVCYTGLSSE PHDYVCNGLN KSKAVNASTL ILGMLTTVLS VLYSALRAGS
310 320 330 340 350
STTFLSPPSS PRSGVKDALL GDPEDGKKSG EAEARPVSYS YSFFHIIFAL
360 370 380 390 400
ASMYAAMLLS GWTDSSESAT LIDVGWTSVW VKICTGWVTA GLYIWTLIAP

LILPDREFY
Length:409
Mass (Da):44,877
Last modified:September 13, 2005 - v1
Checksum:iBC7623885E1BC6C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT023726 mRNA. Translation: AAZ23918.1.
CP002686 Genomic DNA. Translation: AEE74356.1.
RefSeqiNP_187268.2. NM_111492.4.
UniGeneiAt.47823.

Genome annotation databases

EnsemblPlantsiAT3G06170.1; AT3G06170.1; AT3G06170.
GeneIDi819791.
KEGGiath:AT3G06170.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT023726 mRNA. Translation: AAZ23918.1.
CP002686 Genomic DNA. Translation: AEE74356.1.
RefSeqiNP_187268.2. NM_111492.4.
UniGeneiAt.47823.

3D structure databases

ProteinModelPortaliQ494Q0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G06170.1-P.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G06170.1; AT3G06170.1; AT3G06170.
GeneIDi819791.
KEGGiath:AT3G06170.

Organism-specific databases

TAIRiAT3G06170.

Phylogenomic databases

eggNOGiNOG308011.
HOGENOMiHOG000165463.
OMAiHIPWINA.
PhylomeDBiQ494Q0.

Gene expression databases

ExpressionAtlasiQ494Q0. baseline and differential.
GenevestigatoriQ494Q0.

Family and domain databases

InterProiIPR005016. TDE1/TMS.
[Graphical view]
PANTHERiPTHR10383. PTHR10383. 1 hit.
PfamiPF03348. Serinc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H., Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E., Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  2. "Arabidopsis ORF clones."
    Cheuk R., Chen H., Kim C.J., Shinn P., Ecker J.R.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ494Q0_ARATH
AccessioniPrimary (citable) accession number: Q494Q0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: February 4, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.