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Q494Q0

- Q494Q0_ARATH

UniProt

Q494Q0 - Q494Q0_ARATH

Protein
Submitted name:

At3g06170

Gene

At3g06170

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (13 Sep 2005)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    At3g06170Imported
    Submitted name:
    Serinc-domain containing serine and sphingolipid biosynthesis proteinImported
    Gene namesi
    Ordered Locus Names:At3g06170Imported
    OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G06170.

    Subcellular locationi

    GO - Cellular componenti

    1. membrane Source: InterPro

    Expressioni

    Gene expression databases

    GenevestigatoriQ494Q0.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT3G06170.1-P.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG308011.
    HOGENOMiHOG000165463.
    InParanoidiQ494Q0.
    OMAiNGLHNKS.
    PhylomeDBiQ494Q0.

    Family and domain databases

    InterProiIPR005016. TDE1/TMS.
    [Graphical view]
    PANTHERiPTHR10383. PTHR10383. 1 hit.
    PfamiPF03348. Serinc. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q494Q0-1 [UniParc]FASTAAdd to Basket

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    MACCLASCCA SATCGLCSSV ASGISRKSAR IAYCGLFGAS LVVSWILRET    50
    GAPLLEKLPW INTSDSYTKE WYQQQAVLRV SFGNFLFFAI YALIMIGVKD 100
    QNDRRDSWHH GGWGLKMIVW FLLVVLMFFV PNVIVSLYGT LSKFGAGAFL 150
    LVQVVLLLDA THNWNDSWVE KDEKKWYIAL LVISIVCYIA TYTFSGILFI 200
    WFNPSGQDCG LNVFFIVMPM ILAFVFAIIA LHPAVNGSLL PASVISVYCA 250
    YVCYTGLSSE PHDYVCNGLN KSKAVNASTL ILGMLTTVLS VLYSALRAGS 300
    STTFLSPPSS PRSGVKDALL GDPEDGKKSG EAEARPVSYS YSFFHIIFAL 350
    ASMYAAMLLS GWTDSSESAT LIDVGWTSVW VKICTGWVTA GLYIWTLIAP 400
    LILPDREFY 409
    Length:409
    Mass (Da):44,877
    Last modified:September 13, 2005 - v1
    Checksum:iBC7623885E1BC6C0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BT023726 mRNA. Translation: AAZ23918.1.
    CP002686 Genomic DNA. Translation: AEE74356.1.
    RefSeqiNP_187268.2. NM_111492.4.
    UniGeneiAt.47823.

    Genome annotation databases

    EnsemblPlantsiAT3G06170.1; AT3G06170.1; AT3G06170.
    GeneIDi819791.
    KEGGiath:AT3G06170.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BT023726 mRNA. Translation: AAZ23918.1 .
    CP002686 Genomic DNA. Translation: AEE74356.1 .
    RefSeqi NP_187268.2. NM_111492.4.
    UniGenei At.47823.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT3G06170.1-P.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G06170.1 ; AT3G06170.1 ; AT3G06170 .
    GeneIDi 819791.
    KEGGi ath:AT3G06170.

    Organism-specific databases

    TAIRi AT3G06170.

    Phylogenomic databases

    eggNOGi NOG308011.
    HOGENOMi HOG000165463.
    InParanoidi Q494Q0.
    OMAi NGLHNKS.
    PhylomeDBi Q494Q0.

    Gene expression databases

    Genevestigatori Q494Q0.

    Family and domain databases

    InterProi IPR005016. TDE1/TMS.
    [Graphical view ]
    PANTHERi PTHR10383. PTHR10383. 1 hit.
    Pfami PF03348. Serinc. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
      European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
      Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
      , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. ColumbiaImported.
    2. "Arabidopsis ORF clones."
      Cheuk R., Chen H., Kim C.J., Shinn P., Ecker J.R.
      Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    3. TAIR
      Swarbreck D., Lamesch P., Wilks C., Huala E.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    4. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. ColumbiaImported.

    Entry informationi

    Entry nameiQ494Q0_ARATH
    AccessioniPrimary (citable) accession number: Q494Q0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 13, 2005
    Last sequence update: September 13, 2005
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3