Reviewed, UniProtKB/Swiss-Prot Q49467 (GYRA_MYCGO)

Names and origin

Protein names

Recommended name:
    DNA gyrase subunit A
    EC=5.99.1.3
Cleaved into the following chain:
    1- Recommended name:
            Mgo gyrA intein

Gene names

Name:

gyrA

Organism

Mycobacterium gordonae

Taxonomic identifier

1778 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Mycobacteriaceae › Mycobacterium

Protein attributes

Sequence length	550 AA.
Sequence status	Fragment.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.
Catalytic activity	ATP-dependent breakage, passage and rejoining of double-stranded DNA.
Subunit structure	Made up of two chains. The A chain is responsible for DNA breakage and rejoining; the B chain catalyzes ATP hydrolysis. The enzyme forms an A2B2 tetramer.
Post-translational modification	This protein undergoes a protein self splicing that involves a post-translational excision of the intervening region (intein) followed by peptide ligation By similarity.
Sequence similarities	Belongs to the topoisomerase gyrA/parC subunit family. Contains 1 DOD-type homing endonuclease domain.

Ontologies

Keywords
Ligand	ATP-binding DNA-binding Nucleotide-binding
Molecular function	Isomerase Topoisomerase
PTM	Autocatalytic cleavage Protein splicing
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro intein-mediated protein splicing Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC endonuclease activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	‹1 – 66	›66	DNA gyrase subunit A, 1st part By similarity		PRO_0000034801
	Chain	67 – 486	420	Mgo gyrA intein By similarity		PRO_0000034802
	Chain	487 – ›550	›64	DNA gyrase subunit A, 2nd part By similarity		PRO_0000034803
Regions
	Domain	192 – 332	141	DOD-type homing endonuclease
Sites
	Active site	66	1	O-(5'-phospho-DNA)-tyrosine intermediate By similarity
Experimental info
	Non-terminal residue	1	1
	Non-terminal residue	550	1

Sequences

	Sequence		Length	Mass (Da)
	Q49467-1 [UniParc]. Last modified November 1, 1996. Version 1. Checksum: B71730590609E09C	FASTA	550	60,537
	10 20 30 40 50 60 FRPDRSHAKS ARSVAETMGN YHPHGDASIY DTLVRMAQPW SLRYPLVDGQ GNFGSPGNDP 70 80 90 100 110 120 PAAMRYCLTG DALVRLPFGQ SMRIGDVAPG ARTNSDNAGE LKVLDRHGDP VFADRLFHSG 130 140 150 160 170 180 DHQTFRVQTA EGYEVTGTSN HPVLCLVNLA GVPTLLWMLI EEIRPDDYVV LQRAPPVESG 190 200 210 220 230 240 PANWRDAMEA LLLGAFISEG FMSESRAGFN NVDRDYFNAV VAAYDAVVGG KRYVAQRTIA 250 260 270 280 290 300 SGSVLNELDI HDVSALKGTR LGVLCGQRSA DKSVPEWLWQ SPAAVKRVFL QALFEGDGSC 310 320 330 340 350 360 SALPRNTIQV SYSTRSRQLA IDVQQMLLEF GVISRRYRHA VGEYKVVITN RAQAELFATQ 370 380 390 400 410 420 IGFGGAKQSK LTRILGSLPP CAGMDTNHVP GLAAFIRSHC DSEWVDKEWL RKHNIDRLSR 430 440 450 460 470 480 WRRDGAEILS RIANPDVRAI ATDLTDGRFY YAQVTSVTEA GVQPVYSLRV DSEDHAFLTN 490 500 510 520 530 540 GFVSHNTEAR LTPLAMEMLR EIDEETVDFI PNYDGRVQEP TVLPSRFPNL LANGSGGIAV 550 GMATNIPPHN

References

[1]	"Homing events in the gyrA gene of some mycobacteria." Fsihi H., Vincent V., Cole S.T. Proc. Natl. Acad. Sci. U.S.A. 93:3410-3415(1996) [PubMed: 8622949] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: GOR0 / 930835.

Cross-references

Sequence databases
EMBL GenBank DDBJ	Z68208 Genomic DNA. Translation: CAA92432.1.
3D structure databases
SMR	Q49467. Positions 4-66, 67-486, 487-550.
ModBase	Search...
Enzyme and pathway databases
BRENDA	5.99.1.3. 270226.
Family and domain databases
InterPro	IPR003586. Hedgehog_hint_C. IPR003587. Hedgehog_hint_N. IPR006142. INTEIN. IPR004042. Intein_endonuc. IPR006141. Intein_splicing_site. IPR002205. Topo_IIA_A/C. IPR013758. Topo_IIA_A/C_ab. IPR013760. Topo_IIA_cen. [Graphical view]
Gene3D	G3DSA:3.90.199.10. Topo_IIA_A/C_ab. 1 hit.
Pfam	PF00521. DNA_topoisoIV. 2 hits. [Graphical view]
PRINTS	PR00379. INTEIN.
SMART	SM00305. HintC. 1 hit. SM00306. HintN. 1 hit. SM00434. TOP4c. 1 hit. [Graphical view]
TIGRFAMs	TIGR01443. intein_Cterm. 1 hit. TIGR01445. intein_Nterm. 1 hit.
PROSITE	PS50818. INTEIN_C_TER. 1 hit. PS50819. INTEIN_ENDONUCLEASE. 1 hit. PS50817. INTEIN_N_TER. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

GYRA_MYCGO

Accession

Primary (citable) accession number: Q49467

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1996
Last modified:	February 9, 2010
This is version 61 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)