Q48MJ3 (Q48MJ3_PSE14) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alginate lyase HAMAP MF_00557
EC=4.2.2.3 HAMAP MF_00557

Alternative name(s):
Poly(beta-D-mannuronate) lyase HAMAP MF_00557
Poly(mana) alginate lyase HAMAP MF_00557

Gene names

Name:	algL HAMAP MF_00557
Ordered Locus Names:	PSPPH_1111

Organism

Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) [Complete proteome] [HAMAP] EMBL AAZ36796.1

Taxonomic identifier

264730 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas syringae pv. savastanoi

Protein attributes

Sequence length	380 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond By similarity. HAMAP MF_00557
Catalytic activity	Eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. HAMAP MF_00557
Subcellular location	Periplasm By similarity HAMAP MF_00557.
Sequence similarities	Belongs to the polysaccharide lyase 5 family. HAMAP MF_00557

Ontologies

Keywords
Cellular component	Periplasm HAMAP MF_00557
Domain	Signal HAMAP MF_00557
Molecular function	Lyase HAMAP MF_00557 EMBL AAZ36796.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alginic acid catabolic process Inferred from electronic annotation. Source: HAMAP
Cellular component	periplasmic space Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	poly(beta-D-mannuronate) lyase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 28	28	By similarity HAMAP MF_00557

Sequences

	Sequence		Length	Mass (Da)
	Q48MJ3 [UniParc]. Last modified September 13, 2005. Version 1. Checksum: 64F0BCB207F742A4	FASTA	380	42,708
	10 20 30 40 50 60 MQTPKLIRPT LLSMAILSSM AWATGASAAL VPPKGYDAPI EKMKTGDHNF SCEAIPKPYT 70 80 90 100 110 120 DKLVFRSKYE GSDKARATLN AVSEEAFRDA TKDITDLERG VSKVVMQYMR DGRPEQLDCA 130 140 150 160 170 180 LNMMTTWAKA DALESREFNH TGKSMRKWAL GSMSSAYLRL KFSESHPLAN RQQDAKIIEA 190 200 210 220 230 240 WFSKLADQVV SDWSNLPLEK INNHSYWAAW SVMATAVATN RQDLFDWAVK EYKVAANQVD 250 260 270 280 290 300 KDGFLPNEMK RRQRALSYHN YALPPLAMIA SFAQANGVDL RPENNGALKR LGDRVLAGVK 310 320 330 340 350 360 DPSIFAEHNG EKQDMTDLKK DPKFAWLEPY CSLYPCSPDV LEEKHEKQPF KTFRLGGDLT 370 380 KVYDPTHEKG DKGEGDNDGS

References

[1]

"Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition." Joardar V., Lindeberg M., Jackson R.W., Selengut J., Dodson R., Brinkac L.M., Daugherty S.C., DeBoy R.T., Durkin A.S., Gwinn Giglio M., Madupu R., Nelson W.C., Rosovitz M.J., Sullivan S.A., Crabtree J., Creasy T., Davidsen T.M., Haft D.H. , Zafar N., Zhou L., Halpin R., Holley T., Khouri H.M., Feldblyum T.V., White O., Fraser C.M., Chatterjee A.K., Cartinhour S., Schneider D., Mansfield J.W., Collmer A., Buell R. J. Bacteriol. 187:6488-6498(2005) [PubMed: 16159782] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000058 Genomic DNA. Translation: AAZ36796.1.
RefSeq	YP_273379.1. NC_005773.3.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q48MJ3.
Protein family/group databases
CAZy	PL5. Polysaccharide Lyase Family 5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3559422.
GenomeReviews	Gene locus PSPPH_1111 in contig CP000058_GR.
KEGG	psp:PSPPH_1111.
NMPDR	fig|264730.3.peg.412.
PATRIC	19971322. VBIPseSyr78478_1167.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG42597.
HOGENOM	HBG336064.
OMA	AAWSVMA.
ProtClustDB	PRK00325.
Family and domain databases
HAMAP	MF_00557. Alginate_lyase. [Tree]
InterPro	IPR022859. Alginate_lyase. IPR008397. Alginate_lyase_dom. IPR008929. Chondroitin_lyas. [Graphical view]
Gene3D	G3DSA:1.50.10.110. Alginate_lyase. 1 hit.
KO	K01729.
Pfam	PF05426. Alginate_lyase. 1 hit. [Graphical view]
SUPFAM	SSF48230. Chondroitin_lyas. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q48MJ3_PSE14

Accession

Primary (citable) accession number: Q48MJ3

Entry history

Integrated into UniProtKB/TrEMBL:	September 13, 2005
Last sequence update:	September 13, 2005
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)