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Q48DK1 (Q48DK1_PSE14) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length637 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Catalyzes the biosynthesis of agmatine from arginine By similarity. HAMAP-Rule MF_01417

Catalytic activity

L-arginine = agmatine + CO2. HAMAP-Rule MF_01417 RuleBase RU003740 SAAS SAAS022644

Cofactor

Magnesium By similarity. HAMAP-Rule MF_01417 RuleBase RU003740 SAAS SAAS022644

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01417 SAAS SAAS022644

Pathway

Amine and polyamine biosynthesis; agmatine biosynthesis; agmatine from L-arginine: step 1/1. HAMAP-Rule MF_01417

Sequence similarities

Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. HAMAP-Rule MF_01417

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region290 – 30011Substrate-binding By similarity HAMAP-Rule MF_01417

Amino acid modifications

Modified residue1101N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01417

Sequences

Sequence LengthMass (Da)Tools
Q48DK1 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: 1E9FCEBD3392A87C

FASTA63771,396
        10         20         30         40         50         60 
MSVRRTRKDD GSQWTVADSR SVYGIRHWGA GYFAINEAGR VEVRPNGPDS SPIDLYEQVD 

        70         80         90        100        110        120 
NLRKSGLSLP LLVRFPDILQ DRVRQLTGAF DSNIARLEYQ SQYTALYPIK VNQQEAVVEN 

       130        140        150        160        170        180 
IIATQNVSIG LEAGSKPELM AVLALAPKGG TIVCNGYKDR EFIRLALMGQ KLGHNVFIVI 

       190        200        210        220        230        240 
EKESEVELVI EEAAELKVAP QVGLRVRLSS LASSKWADTG GEKSKFGLSA AQLLSVVERF 

       250        260        270        280        290        300 
RKAGLDQGIR LLHFHMGSQI ANLADYQHGF KEAIRYYGEL RKLGLPVDYI DVGGGLGVDY 

       310        320        330        340        350        360 
DGTHSRNASS INYDMDDYAG VVVGMLKEFC DAQSLPHPHI FSESGRSLTA HHAMLVVQVT 

       370        380        390        400        410        420 
DVEKHNDEVP EISDKESLPE TVQWLVDLLG PTDIEMVTET YWRATHYMSD IATQYADGKI 

       430        440        450        460        470        480 
SLAEKALGEQ CYFAVCRRLY NSLKARQRSH RQVLDELNDK LADKYICNFS VFQSLPDTWA 

       490        500        510        520        530        540 
IGQVLPILPL HRLDEEPVRR AVLQDLTCDS DGKIKQYVDE QSIETSMPVH SLNEGEDYLL 

       550        560        570        580        590        600 
GIFLVGAYQE ILGDMHNLFG DTDSVNIYQN PDGSVYHAGI ETHDTIEDML RYVHLSPEEL 

       610        620        630 
MTHYRDKVAS AKITPRERTY FLDALRLGLT RSSYLSS 

« Hide

References

[1]"Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition."
Joardar V., Lindeberg M., Jackson R.W., Selengut J., Dodson R., Brinkac L.M., Daugherty S.C., DeBoy R.T., Durkin A.S., Gwinn Giglio M., Madupu R., Nelson W.C., Rosovitz M.J., Sullivan S.A., Crabtree J., Creasy T., Davidsen T.M., Haft D.H. expand/collapse author list , Zafar N., Zhou L., Halpin R., Holley T., Khouri H.M., Feldblyum T.V., White O., Fraser C.M., Chatterjee A.K., Cartinhour S., Schneider D., Mansfield J.W., Collmer A., Buell R.
J. Bacteriol. 187:6488-6498(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 1448A / Race 6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000058 Genomic DNA. Translation: AAZ33811.1.
RefSeqYP_276540.1. NC_005773.3.

3D structure databases

ProteinModelPortalQ48DK1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING264730.PSPPH_4424.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAZ33811; AAZ33811; PSPPH_4424.
GeneID3556349.
KEGGpsp:PSPPH_4424.
PATRIC19978339. VBIPseSyr78478_4626.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1166.
HOGENOMHOG000029191.
KOK01585.
OMAIDHYVDG.
OrthoDBEOG676Z0R.

Enzyme and pathway databases

BioCycPSAV264730:GKDE-4428-MONOMER.
UniPathwayUPA00186; UER00284.

Family and domain databases

Gene3D2.40.37.10. 2 hits.
3.20.20.10. 1 hit.
HAMAPMF_01417. SpeA.
InterProIPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022657. De-COase2_CS.
IPR022644. De-COase2_N.
IPR000183. Orn/DAP/Arg_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PIRSFPIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSPR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsTIGR01273. speA. 1 hit.
PROSITEPS00879. ODR_DC_2_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ48DK1_PSE14
AccessionPrimary (citable) accession number: Q48DK1
Entry history
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: July 9, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)