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Protein
Submitted name:

Molybdenum formylmethanofuran dehydrogenase subunit fmdF

Gene

fmdF

Organism
Methanosarcina barkeri
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Protein family/group databases

TCDBi3.D.8.1.2. the na(+)- or h(+)-pumping formyl methanofuran dehydrogenase (fmf-dh) family.

Names & Taxonomyi

Protein namesi
Submitted name:
Molybdenum formylmethanofuran dehydrogenase subunit fmdFImported
Gene namesi
Name:fmdFImported
OrganismiMethanosarcina barkeriImported
Taxonomic identifieri2208 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanosarcina

Interactioni

Protein-protein interaction databases

STRINGi269797.Mbar_A1288.

Structurei

3D structure databases

ProteinModelPortaliQ48941.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini16 – 454Fe-4S ferredoxin-typeInterPro annotationAdd BLAST30
Domaini56 – 864Fe-4S ferredoxin-typeInterPro annotationAdd BLAST31
Domaini100 – 1294Fe-4S ferredoxin-typeInterPro annotationAdd BLAST30
Domaini140 – 1694Fe-4S ferredoxin-typeInterPro annotationAdd BLAST30
Domaini172 – 2014Fe-4S ferredoxin-typeInterPro annotationAdd BLAST30
Domaini208 – 2374Fe-4S ferredoxin-typeInterPro annotationAdd BLAST30
Domaini265 – 2944Fe-4S ferredoxin-typeInterPro annotationAdd BLAST30
Domaini313 – 3434Fe-4S ferredoxin-typeInterPro annotationAdd BLAST31

Phylogenomic databases

eggNOGiENOG4102TQV. Archaea.
ENOG4112A73. LUCA.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR016459. Formylmethanofuran_DH_fsu.
[Graphical view]
PfamiPF00037. Fer4. 2 hits.
PF12838. Fer4_7. 1 hit.
PF13187. Fer4_9. 1 hit.
[Graphical view]
PIRSFiPIRSF005658. FwdF. 1 hit.
PROSITEiPS00198. 4FE4S_FER_1. 7 hits.
PS51379. 4FE4S_FER_2. 8 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q48941-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQEDMRLSVF AEKKDKQLIY SPEKCIGCGT CVQACPKGNL AIGAVGAITR
60 70 80 90 100
GLVDADFLEM KEREACLVCG ICAKACPTGA LEMKQEGKTI TDKSYLFRAM
110 120 130 140 150
KPTSVNESCV HCGLCEDICP QGCIEVTRDI SADGKLKLVG KTNIDTECCV
160 170 180 190 200
HCGWCAAVCP VNAISVEKPF EGHWARDEDV CQTCHTCVEV CPANAIFNKK
210 220 230 240 250
AKPGERVEKI THRPDACIYC GACAVACPVD AIDVRKTAIL PDMEKKGVLE
260 270 280 290 300
KKLLEKPAPE TMLRTCLETD EAACLGCGNC VIVCPVNALS DCELAAGHLN
310 320 330 340
NMDEKALLGV KNGRIKVIDQ DRCGADGACA MICPVDAIRL VKREVK
Length:346
Mass (Da):37,252
Last modified:November 1, 1996 - v1
Checksum:iF4FBBDE91F55F932
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X93084 Genomic DNA. Translation: CAA63629.1.
PIRiS62197.

Genome annotation databases

GeneIDi3627697.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X93084 Genomic DNA. Translation: CAA63629.1.
PIRiS62197.

3D structure databases

ProteinModelPortaliQ48941.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269797.Mbar_A1288.

Protein family/group databases

TCDBi3.D.8.1.2. the na(+)- or h(+)-pumping formyl methanofuran dehydrogenase (fmf-dh) family.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi3627697.

Phylogenomic databases

eggNOGiENOG4102TQV. Archaea.
ENOG4112A73. LUCA.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR016459. Formylmethanofuran_DH_fsu.
[Graphical view]
PfamiPF00037. Fer4. 2 hits.
PF12838. Fer4_7. 1 hit.
PF13187. Fer4_9. 1 hit.
[Graphical view]
PIRSFiPIRSF005658. FwdF. 1 hit.
PROSITEiPS00198. 4FE4S_FER_1. 7 hits.
PS51379. 4FE4S_FER_2. 8 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ48941_METBA
AccessioniPrimary (citable) accession number: Q48941
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: October 5, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.