Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

tRNA 2-selenouridine synthase

Gene

selU

Organism
Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA.UniRule annotation

Catalytic activityi

5-methylaminomethyl-2-thiouridine + selenophosphate = 5-methylaminomethyl-2-selenouridine + phosphate.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei108 – 1081S-selanylcysteine intermediateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Transferase

Keywords - Ligandi

Selenium

Enzyme and pathway databases

BioCyciCPSY167879:GI48-769-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA 2-selenouridine synthaseUniRule annotation (EC:2.9.1.-UniRule annotation)
Alternative name(s):
Selenophosphate-dependent tRNA 2-selenouridine synthaseUniRule annotation
Gene namesi
Name:selUUniRule annotation
Ordered Locus Names:CPS_0769
OrganismiColwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)
Taxonomic identifieri167879 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesColwelliaceaeColwellia
Proteomesi
  • UP000000547 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 372372tRNA 2-selenouridine synthasePRO_0000210858Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi167879.CPS_0769.

Structurei

3D structure databases

ProteinModelPortaliQ488J6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini25 – 148124RhodaneseUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the 2-selenouridine synthase family.UniRule annotation
Contains 1 rhodanese domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CR7. Bacteria.
COG2603. LUCA.
HOGENOMiHOG000260000.
KOiK06917.
OMAiLHRGWIE.
OrthoDBiEOG6M3PB3.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
HAMAPiMF_01622. tRNA_sel_U_synth.
InterProiIPR001763. Rhodanese-like_dom.
IPR017582. tRNA_2-selenouridine_synthase.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 2 hits.
TIGRFAMsiTIGR03167. tRNA_sel_U_synt. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q488J6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSINTSGKIT SATERADSAD FRTIIRNKIP LMDVRAPVEF GKGAFDLSIN
60 70 80 90 100
YPLMNNDERA DVGICYKQNG QEAAIKLGNA LVSGQSKARR LTQWQTFARE
110 120 130 140 150
NPQGYLYCFR GGLRSQTVQR WLKESGINYP LITGGYKALR QFLLNELEQL
160 170 180 190 200
ALHPLTILAG NTGSGKTPFL AHCANSLDLE GAAGHRGSSF GSFVTPQSNQ
210 220 230 240 250
INFENKLAEQ YIRGDFSLEQ RLVLEDEGRL IGSVHLPESL RNAMTLAPLV
260 270 280 290 300
VIEESLEYRL EQIYQEYIIK MTAQYQAAYG VEQGFTAFSE YLEHGLFKVR
310 320 330 340 350
KRLGTQRYGQ LKEIQSTALT QQNKGQPQYH LDWLKPLLSE YYDPMYQYQL
360 370
GLKSDRVIFR GNNSECLAFL RD
Length:372
Mass (Da):42,095
Last modified:September 13, 2005 - v1
Checksum:iB8551C818E121821
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000083 Genomic DNA. Translation: AAZ27472.1.
RefSeqiWP_011041618.1. NC_003910.7.

Genome annotation databases

EnsemblBacteriaiAAZ27472; AAZ27472; CPS_0769.
KEGGicps:CPS_0769.
PATRICi21464849. VBIColPsy94388_0681.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000083 Genomic DNA. Translation: AAZ27472.1.
RefSeqiWP_011041618.1. NC_003910.7.

3D structure databases

ProteinModelPortaliQ488J6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi167879.CPS_0769.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ27472; AAZ27472; CPS_0769.
KEGGicps:CPS_0769.
PATRICi21464849. VBIColPsy94388_0681.

Phylogenomic databases

eggNOGiENOG4105CR7. Bacteria.
COG2603. LUCA.
HOGENOMiHOG000260000.
KOiK06917.
OMAiLHRGWIE.
OrthoDBiEOG6M3PB3.

Enzyme and pathway databases

BioCyciCPSY167879:GI48-769-MONOMER.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
HAMAPiMF_01622. tRNA_sel_U_synth.
InterProiIPR001763. Rhodanese-like_dom.
IPR017582. tRNA_2-selenouridine_synthase.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 2 hits.
TIGRFAMsiTIGR03167. tRNA_sel_U_synt. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 34H / ATCC BAA-681.

Entry informationi

Entry nameiSELU_COLP3
AccessioniPrimary (citable) accession number: Q488J6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: September 13, 2005
Last modified: December 9, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.