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Q488E0

- Q488E0_COLP3

UniProt

Q488E0 - Q488E0_COLP3

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Protein
Submitted name: Putative dihydrolipoamide dehydrogenase
Gene
CPS_0826
Organism
Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei11 – 111FADImported
Binding sitei42 – 421FADImported
Binding sitei47 – 471FADImported
Binding sitei52 – 521FADImported
Binding sitei116 – 1161FAD; via amide nitrogen and carbonyl oxygenImported
Metal bindingi309 – 3091Sodium; via carbonyl oxygenImported
Binding sitei310 – 3101FADImported
Metal bindingi312 – 3121SodiumImported
Metal bindingi314 – 3141Sodium; via carbonyl oxygenImported
Binding sitei318 – 3181FAD; via amide nitrogenImported
Metal bindingi324 – 3241SodiumImported

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi15 – 162FADImported
Nucleotide bindingi35 – 362FADImported
Nucleotide bindingi448 – 4492FADImported

GO - Molecular functioni

  1. flavin adenine dinucleotide binding Source: InterPro
  2. metal ion binding Source: UniProtKB-KW
  3. oxidoreductase activity Source: InterPro

GO - Biological processi

  1. cell redox homeostasis Source: InterPro
Complete GO annotation...

Keywords - Ligandi

FADImported, Flavoprotein, Metal-bindingImported, Nucleotide-bindingImported, SodiumImported

Enzyme and pathway databases

BioCyciCPSY167879:GI48-826-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative dihydrolipoamide dehydrogenaseImported
Gene namesi
Ordered Locus Names:CPS_0826Imported
OrganismiColwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)Imported
Taxonomic identifieri167879 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesColwelliaceaeColwellia
ProteomesiUP000000547: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi167879.CPS_0826.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3IC9X-ray2.15A/B/C/D1-489[»]
ProteinModelPortaliQ488E0.

Miscellaneous databases

EvolutionaryTraceiQ488E0.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1249.
HOGENOMiHOG000276709.
KOiK00382.
OMAiMLAMPFY.
OrthoDBiEOG6ZPSW0.

Family and domain databases

Gene3Di3.30.390.30. 1 hit.
InterProiIPR016156. FAD/NAD-linked_Rdtase_dimer.
IPR013027. FAD_pyr_nucl-diS_OxRdtase.
IPR004099. Pyr_nucl-diS_OxRdtase_dimer.
IPR023753. Pyr_nucl-diS_OxRdtase_FAD/NAD.
IPR001327. Pyr_OxRdtase_NAD-bd_dom.
[Graphical view]
PfamiPF00070. Pyr_redox. 1 hit.
PF07992. Pyr_redox_2. 1 hit.
PF02852. Pyr_redox_dim. 1 hit.
[Graphical view]
PRINTSiPR00368. FADPNR.
SUPFAMiSSF55424. SSF55424. 1 hit.

Sequencei

Sequence statusi: Complete.

Q488E0-1 [UniParc]FASTAAdd to Basket

« Hide

MKVINVDVAI IGTGTAGMGA YRAAKKHTDK VVLIEGGAYG TTCARVGCMP    50
SKLLIAAADA SYHASQTDLF GIQVDRISVN GKAVMKRIQT ERDRFVGFVV 100
ESVESFDEQD KIRGFAKFLD EHTLQVDDHS QVIAKRIVIA TGSRPNYPEF 150
LAAAGSRLLT NDNLFELNDL PKSVAVFGPG VIGLELGQAL SRLGVIVKVF 200
GRSGSVANLQ DEEMKRYAEK TFNEEFYFDA KARVISTIEK EDAVEVIYFD 250
KSGQKTTESF QYVLAATGRK ANVDKLGLEN TSIELDKKNS PLFDELTLQT 300
SVDHIFVAGD ANNTLTLLHE AADDGKVAGT NAGAYPVIAQ GQRRAPLSVV 350
FTEPQVASVG LSLRQIEDLY ADQDAANYVV GQVSFEGQGR SRVMGKNKGL 400
LNVYADRTSG EFLGAEMFGP AAEHIGHLLA WARQQQMTVQ AMLTMPFYHP 450
VIEEGLRTAL RDAQQKLAIE KHDMNEFIMT HDNAMKLVI 489
Length:489
Mass (Da):53,476
Last modified:September 13, 2005 - v1
Checksum:iEF7D3BD5E806B23F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000083 Genomic DNA. Translation: AAZ24299.1.
RefSeqiWP_011041675.1. NC_003910.7.
YP_267575.1. NC_003910.7.

Genome annotation databases

EnsemblBacteriaiAAZ24299; AAZ24299; CPS_0826.
GeneIDi3519726.
KEGGicps:CPS_0826.
PATRICi21464947. VBIColPsy94388_0730.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000083 Genomic DNA. Translation: AAZ24299.1 .
RefSeqi WP_011041675.1. NC_003910.7.
YP_267575.1. NC_003910.7.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3IC9 X-ray 2.15 A/B/C/D 1-489 [» ]
ProteinModelPortali Q488E0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 167879.CPS_0826.

Protocols and materials databases

DNASUi 3519726.
Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAZ24299 ; AAZ24299 ; CPS_0826 .
GeneIDi 3519726.
KEGGi cps:CPS_0826.
PATRICi 21464947. VBIColPsy94388_0730.

Phylogenomic databases

eggNOGi COG1249.
HOGENOMi HOG000276709.
KOi K00382.
OMAi MLAMPFY.
OrthoDBi EOG6ZPSW0.

Enzyme and pathway databases

BioCyci CPSY167879:GI48-826-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q488E0.

Family and domain databases

Gene3Di 3.30.390.30. 1 hit.
InterProi IPR016156. FAD/NAD-linked_Rdtase_dimer.
IPR013027. FAD_pyr_nucl-diS_OxRdtase.
IPR004099. Pyr_nucl-diS_OxRdtase_dimer.
IPR023753. Pyr_nucl-diS_OxRdtase_FAD/NAD.
IPR001327. Pyr_OxRdtase_NAD-bd_dom.
[Graphical view ]
Pfami PF00070. Pyr_redox. 1 hit.
PF07992. Pyr_redox_2. 1 hit.
PF02852. Pyr_redox_dim. 1 hit.
[Graphical view ]
PRINTSi PR00368. FADPNR.
SUPFAMi SSF55424. SSF55424. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 34H / ATCC BAA-681.
  2. "The structure of dihydrolipoamide dehydrogenase from Colwellia psychrerythraea 34H."
    Tan K., Rakowski E., Clancy S., Joachimiak A.
    Submitted (JUL-2009) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS) IN COMPLEX WITH FAD AND SODIUM.

Entry informationi

Entry nameiQ488E0_COLP3
AccessioniPrimary (citable) accession number: Q488E0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: September 3, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome

External Data

Dasty 3

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