Putative dihydrolipoamide dehydrogenase - Colwellia psychrerythraea (strain 34H / ATCC BAA-681)

Preferred order of sections

Names and origin

Protein names

Submitted name:
Putative dihydrolipoamide dehydrogenase EMBL AAZ24299.1

Gene names

Ordered Locus Names:

CPS_0826

Organism

Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) [Complete proteome] [HAMAP] EMBL AAZ24299.1

Taxonomic identifier

167879 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Colwelliaceae › Colwellia ›

Protein attributes

Sequence length	489 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	FAD PDB 3IC9 Flavoprotein PDB 3IC9 Nucleotide-binding PDB 3IC9
Technical term	3D-structure PDB 3IC9 Complete proteome
Gene Ontology (GO)
Biological_process	cell redox homeostasis Inferred from electronic annotation. Source: InterPro
Cellular_component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular_function	flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro oxidoreductase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Nucleotide binding

15 – 16

2

FAD PDB 3IC9

Nucleotide binding

35 – 36

2

FAD PDB 3IC9

Nucleotide binding

448 – 449

2

FAD PDB 3IC9

Sites

Binding site

11

1

FAD PDB 3IC9

Binding site

42

1

FAD PDB 3IC9

Binding site

47

1

FAD PDB 3IC9

Binding site

52

1

FAD PDB 3IC9

Binding site

116

1

FAD; via amide nitrogen and carbonyl oxygen PDB 3IC9

Binding site

310

1

FAD PDB 3IC9

Binding site

318

1

FAD; via amide nitrogen PDB 3IC9

Sequences

Sequence

Length

Mass (Da)

Tools

Q488E0 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: EF7D3BD5E806B23F
Show »

FASTA

489

53,476

        10         20         30         40         50         60 
MKVINVDVAI IGTGTAGMGA YRAAKKHTDK VVLIEGGAYG TTCARVGCMP SKLLIAAADA 

        70         80         90        100        110        120 
SYHASQTDLF GIQVDRISVN GKAVMKRIQT ERDRFVGFVV ESVESFDEQD KIRGFAKFLD 

       130        140        150        160        170        180 
EHTLQVDDHS QVIAKRIVIA TGSRPNYPEF LAAAGSRLLT NDNLFELNDL PKSVAVFGPG 

       190        200        210        220        230        240 
VIGLELGQAL SRLGVIVKVF GRSGSVANLQ DEEMKRYAEK TFNEEFYFDA KARVISTIEK 

       250        260        270        280        290        300 
EDAVEVIYFD KSGQKTTESF QYVLAATGRK ANVDKLGLEN TSIELDKKNS PLFDELTLQT 

       310        320        330        340        350        360 
SVDHIFVAGD ANNTLTLLHE AADDGKVAGT NAGAYPVIAQ GQRRAPLSVV FTEPQVASVG 

       370        380        390        400        410        420 
LSLRQIEDLY ADQDAANYVV GQVSFEGQGR SRVMGKNKGL LNVYADRTSG EFLGAEMFGP 

       430        440        450        460        470        480 
AAEHIGHLLA WARQQQMTVQ AMLTMPFYHP VIEEGLRTAL RDAQQKLAIE KHDMNEFIMT 


HDNAMKLVI

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References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses." Methe B.A., Nelson K.E., Deming J.W., Momen B., Melamud E., Zhang X., Moult J., Madupu R., Nelson W.C., Dodson R.J., Brinkac L.M., Daugherty S.C., Durkin A.S., DeBoy R.T., Kolonay J.F., Sullivan S.A., Zhou L., Davidsen T.M. Fraser C.M. Proc. Natl. Acad. Sci. U.S.A. 102:10913-10918(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 34H / ATCC BAA-681.
[2]	"The structure of dihydrolipoamide dehydrogenase from Colwellia psychrerythraea 34H." Tan K., Rakowski E., Clancy S., Joachimiak A. Submitted (JUL-2009) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS) IN COMPLEX WITH FAD.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000083 Genomic DNA. Translation: AAZ24299.1.

RefSeq

YP_267575.1. NC_003910.7.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3IC9	X-ray	2.15	A/B/C/D	1-489	[»]

ProteinModelPortal

Q488E0.

ModBase

Search...

Protein-protein interaction databases

STRING

167879.CPS_0826.

Protocols and materials databases

DNASU

3519726.

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

AAZ24299; AAZ24299; CPS_0826.

GeneID

3519726.

KEGG

cps:CPS_0826.

PATRIC

21464947. VBIColPsy94388_0730.

Organism-specific databases

CMR

Search...

Phylogenomic databases

eggNOG

COG1249.

HOGENOM

HOG000276709.

KO

K00382.

OMA

GMGAYRA.

ProtClustDB

PRK06292.

Enzyme and pathway databases

BioCyc

CPSY167879:GI48-912-MONOMER.

Family and domain databases

Gene3D

3.30.390.30. 1 hit.

InterPro

IPR016156. FAD/NAD-linked_Rdtase_dimer.
IPR013027. FAD_pyr_nucl-diS_OxRdtase.
IPR004099. Pyr_nucl-diS_OxRdtase_dimer.
IPR023753. Pyr_nucl-diS_OxRdtase_FAD/NAD.
IPR001327. Pyr_OxRdtase_NAD-bd_dom.
[Graphical view]

Pfam

PF00070. Pyr_redox. 1 hit.
PF07992. Pyr_redox_2. 1 hit.
PF02852. Pyr_redox_dim. 1 hit.
[Graphical view]

PRINTS

PR00368. FADPNR.

SUPFAM

SSF55424. FAD/NAD-linked_reductase_dimer. 1 hit.

ProtoNet

Search...

Other

EvolutionaryTrace

Q488E0.

Entry information

Entry name

Q488E0_COLP3

Accession

Primary (citable) accession number: Q488E0

Entry history

Integrated into UniProtKB/TrEMBL:	September 13, 2005
Last sequence update:	September 13, 2005
Last modified:	May 1, 2013
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)