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Q488E0 (Q488E0_COLP3) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:CPS_0826 EMBL AAZ24299.1
OrganismColwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) [Complete proteome] [HAMAP] EMBL AAZ24299.1
Taxonomic identifier167879 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesColwelliaceaeColwellia

Protein attributes

Sequence length489 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding15 – 162FAD PDB 3IC9
Nucleotide binding35 – 362FAD PDB 3IC9
Nucleotide binding448 – 4492FAD PDB 3IC9

Sites

Metal binding3091Sodium; via carbonyl oxygen PDB 3IC9
Metal binding3121Sodium PDB 3IC9
Metal binding3141Sodium; via carbonyl oxygen PDB 3IC9
Metal binding3241Sodium PDB 3IC9
Binding site111FAD PDB 3IC9
Binding site421FAD PDB 3IC9
Binding site471FAD PDB 3IC9
Binding site521FAD PDB 3IC9
Binding site1161FAD; via amide nitrogen and carbonyl oxygen PDB 3IC9
Binding site3101FAD PDB 3IC9
Binding site3181FAD; via amide nitrogen PDB 3IC9

Sequences

Sequence LengthMass (Da)Tools
Q488E0 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: EF7D3BD5E806B23F

FASTA48953,476
        10         20         30         40         50         60 
MKVINVDVAI IGTGTAGMGA YRAAKKHTDK VVLIEGGAYG TTCARVGCMP SKLLIAAADA 

        70         80         90        100        110        120 
SYHASQTDLF GIQVDRISVN GKAVMKRIQT ERDRFVGFVV ESVESFDEQD KIRGFAKFLD 

       130        140        150        160        170        180 
EHTLQVDDHS QVIAKRIVIA TGSRPNYPEF LAAAGSRLLT NDNLFELNDL PKSVAVFGPG 

       190        200        210        220        230        240 
VIGLELGQAL SRLGVIVKVF GRSGSVANLQ DEEMKRYAEK TFNEEFYFDA KARVISTIEK 

       250        260        270        280        290        300 
EDAVEVIYFD KSGQKTTESF QYVLAATGRK ANVDKLGLEN TSIELDKKNS PLFDELTLQT 

       310        320        330        340        350        360 
SVDHIFVAGD ANNTLTLLHE AADDGKVAGT NAGAYPVIAQ GQRRAPLSVV FTEPQVASVG 

       370        380        390        400        410        420 
LSLRQIEDLY ADQDAANYVV GQVSFEGQGR SRVMGKNKGL LNVYADRTSG EFLGAEMFGP 

       430        440        450        460        470        480 
AAEHIGHLLA WARQQQMTVQ AMLTMPFYHP VIEEGLRTAL RDAQQKLAIE KHDMNEFIMT 


HDNAMKLVI 

« Hide

References

« Hide 'large scale' references
[1]"The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses."
Methe B.A., Nelson K.E., Deming J.W., Momen B., Melamud E., Zhang X., Moult J., Madupu R., Nelson W.C., Dodson R.J., Brinkac L.M., Daugherty S.C., Durkin A.S., DeBoy R.T., Kolonay J.F., Sullivan S.A., Zhou L., Davidsen T.M. expand/collapse author list , Wu M., Huston A.L., Lewis M., Weaver B., Weidman J.F., Khouri H., Utterback T.R., Feldblyum T.V., Fraser C.M.
Proc. Natl. Acad. Sci. U.S.A. 102:10913-10918(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 34H / ATCC BAA-681.
[2]"The structure of dihydrolipoamide dehydrogenase from Colwellia psychrerythraea 34H."
Tan K., Rakowski E., Clancy S., Joachimiak A.
Submitted (JUL-2009) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.15 ANGSTROMS) IN COMPLEX WITH FAD AND SODIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000083 Genomic DNA. Translation: AAZ24299.1.
RefSeqYP_267575.1. NC_003910.7.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3IC9X-ray2.15A/B/C/D1-489[»]
ProteinModelPortalQ488E0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING167879.CPS_0826.

Protocols and materials databases

DNASU3519726.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAZ24299; AAZ24299; CPS_0826.
GeneID3519726.
KEGGcps:CPS_0826.
PATRIC21464947. VBIColPsy94388_0730.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1249.
HOGENOMHOG000276709.
KOK00382.
OMAMLAMPFY.
OrthoDBEOG6ZPSW0.

Enzyme and pathway databases

BioCycCPSY167879:GI48-826-MONOMER.

Family and domain databases

Gene3D3.30.390.30. 1 hit.
InterProIPR016156. FAD/NAD-linked_Rdtase_dimer.
IPR013027. FAD_pyr_nucl-diS_OxRdtase.
IPR004099. Pyr_nucl-diS_OxRdtase_dimer.
IPR023753. Pyr_nucl-diS_OxRdtase_FAD/NAD.
IPR001327. Pyr_OxRdtase_NAD-bd_dom.
[Graphical view]
PfamPF00070. Pyr_redox. 1 hit.
PF07992. Pyr_redox_2. 1 hit.
PF02852. Pyr_redox_dim. 1 hit.
[Graphical view]
PRINTSPR00368. FADPNR.
SUPFAMSSF55424. SSF55424. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ488E0.

Entry information

Entry nameQ488E0_COLP3
AccessionPrimary (citable) accession number: Q488E0
Entry history
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: June 11, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)