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Protein

UPF0352 protein CPS_2611

Gene

CPS_2611

Organism
Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0352 protein CPS_2611UniRule annotation
Gene namesi
Ordered Locus Names:CPS_2611
OrganismiColwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus)
Taxonomic identifieri167879 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesColwelliaceaeColwellia
Proteomesi
  • UP000000547 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002017831 – 68UPF0352 protein CPS_2611Add BLAST68

Interactioni

Protein-protein interaction databases

STRINGi167879.CPS_2611.

Structurei

Secondary structure

168
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi9 – 25Combined sources17
Helixi30 – 45Combined sources16
Helixi50 – 52Combined sources3
Helixi53 – 68Combined sources16

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2JR2NMR-A/B1-68[»]
2OTAX-ray2.20A/B1-68[»]
ProteinModelPortaliQ481E4.
SMRiQ481E4.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ481E4.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0352 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105PAN. Bacteria.
COG3082. LUCA.
HOGENOMiHOG000218499.
KOiK09904.
OMAiTHVINSQ.
OrthoDBiPOG091H05IJ.

Family and domain databases

Gene3Di1.10.3390.10. 1 hit.
HAMAPiMF_00816. UPF0352. 1 hit.
InterProiIPR009857. UPF0352.
IPR023202. YejL_dom.
[Graphical view]
PfamiPF07208. DUF1414. 1 hit.
[Graphical view]
PIRSFiPIRSF006188. UCP006188. 1 hit.
ProDomiPD027794. UPF0352. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Q481E4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPIVSKYSNE RVEKIIQDLL DVLVKEEVTP DLALMCLGNA VTNIIAQVPE
60
SKRVAVVDNF TKALKQSV
Length:68
Mass (Da):7,526
Last modified:September 13, 2005 - v1
Checksum:i24320B1259BA1680
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000083 Genomic DNA. Translation: AAZ26870.1.
RefSeqiWP_011043419.1. NC_003910.7.

Genome annotation databases

EnsemblBacteriaiAAZ26870; AAZ26870; CPS_2611.
KEGGicps:CPS_2611.
PATRICi21468281. VBIColPsy94388_2373.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000083 Genomic DNA. Translation: AAZ26870.1.
RefSeqiWP_011043419.1. NC_003910.7.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2JR2NMR-A/B1-68[»]
2OTAX-ray2.20A/B1-68[»]
ProteinModelPortaliQ481E4.
SMRiQ481E4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi167879.CPS_2611.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ26870; AAZ26870; CPS_2611.
KEGGicps:CPS_2611.
PATRICi21468281. VBIColPsy94388_2373.

Phylogenomic databases

eggNOGiENOG4105PAN. Bacteria.
COG3082. LUCA.
HOGENOMiHOG000218499.
KOiK09904.
OMAiTHVINSQ.
OrthoDBiPOG091H05IJ.

Miscellaneous databases

EvolutionaryTraceiQ481E4.

Family and domain databases

Gene3Di1.10.3390.10. 1 hit.
HAMAPiMF_00816. UPF0352. 1 hit.
InterProiIPR009857. UPF0352.
IPR023202. YejL_dom.
[Graphical view]
PfamiPF07208. DUF1414. 1 hit.
[Graphical view]
PIRSFiPIRSF006188. UCP006188. 1 hit.
ProDomiPD027794. UPF0352. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiY2611_COLP3
AccessioniPrimary (citable) accession number: Q481E4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: September 13, 2005
Last modified: November 2, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.