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Q47YS4 (Q47YS4_COLP3) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length470 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units. RuleBase RU361134

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q47YS4 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: 741D54850DF96547

FASTA47052,310
        10         20         30         40         50         60 
MKTTPLLKKF TQASIIASSL LFSQGSYADT ILHAFNWTYD DVATKAQEIA DLGYKKVLVS 

        70         80         90        100        110        120 
PAYKSSGDQW WARYQPQDFR VIHSPLGDTN DFKDMVNALK AKGVETYADI VFNHMANESS 

       130        140        150        160        170        180 
QRSDLNYPGT AVLATYAADS TYYNSIKLFG DLQTGSYGAN DFHPAGCITD WGNPGHVQYW 

       190        200        210        220        230        240 
RLCGGNGDVG LPDLDPNNWV VSQQQAYLQA LKAIGVTGFR VDAAKHMSNY HINAVFNNDI 

       250        260        270        280        290        300 
KNGVHVFGEI ITSGGAGDNS YDAFLAPYLN DTGHSAYDFP LFASLRGALG FGGSMNQLVD 

       310        320        330        340        350        360 
PAAYGQALTP DKAVTFSITH DIPTNEGFRY QILNATDEVL ANAYIMGRDG GTPMMYSDHN 

       370        380        390        400        410        420 
ESNDNNRWLD LYKRSDVAGM VKFHNTAQGH GMQVMSFNDC IILFKRDHIG VVGINKCDNG 

       430        440        450        460        470 
QDVWVNTAEH NLWWNKNYRD VVEGVDVQNI NSQWHKFYLP GRKARMWLME 

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References

[1]"The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses."
Methe B.A., Nelson K.E., Deming J.W., Momen B., Melamud E., Zhang X., Moult J., Madupu R., Nelson W.C., Dodson R.J., Brinkac L.M., Daugherty S.C., Durkin A.S., DeBoy R.T., Kolonay J.F., Sullivan S.A., Zhou L., Davidsen T.M. expand/collapse author list , Wu M., Huston A.L., Lewis M., Weaver B., Weidman J.F., Khouri H., Utterback T.R., Feldblyum T.V., Fraser C.M.
Proc. Natl. Acad. Sci. U.S.A. 102:10913-10918(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 34H / ATCC BAA-681.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000083 Genomic DNA. Translation: AAZ26198.1.
RefSeqYP_270046.1. NC_003910.7.

3D structure databases

ProteinModelPortalQ47YS4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING167879.CPS_3370.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAZ26198; AAZ26198; CPS_3370.
GeneID3520448.
KEGGcps:CPS_3370.
PATRIC21469695. VBIColPsy94388_3047.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000274290.
KOK01176.
OMADLDPNNW.
OrthoDBEOG6K6V4W.

Enzyme and pathway databases

BioCycCPSY167879:GI48-3370-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ47YS4_COLP3
AccessionPrimary (citable) accession number: Q47YS4
Entry history
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: July 9, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)