Q47UF8 (Q47UF8_COLP3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA-binding response regulator, merR family EMBL AAZ24010.1

Gene names

Ordered Locus Names:

CPS_4926

Organism

Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) [Complete proteome] [HAMAP] EMBL AAZ24010.1

Taxonomic identifier

167879 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Colwelliaceae › Colwellia › Colwellia psychrerythraea

Protein attributes

Sequence length	192 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	DNA-binding EMBL AAZ24010.1
Technical term	3D-structure PDB 3CNB Complete proteome
Gene Ontology (GO)
Biological_process	intracellular signal transduction Inferred from electronic annotation. Source: GOC regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW nucleotide binding Inferred from electronic annotation. Source: InterPro phosphorelay response regulator activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q47UF8 [UniParc]. Last modified September 13, 2005. Version 1. Checksum: E27EC1A5D965BD48	FASTA	192	21,314
	10 20 30 40 50 60 MDISKKSLLT PAEAAKLLHV APTTIRHWAQ IGRLPFISTP GGHRRFDRND ILSLMSTPKI 70 80 90 100 110 120 NVKNDFSILI IEDDKEFADM LTQFLENLFP YAKIKIAYNP FDAGDLLHTV KPDVVMLDLM 130 140 150 160 170 180 MVGMDGFSIC HRIKSTPATA NIIVIAMTGA LTDDNVSRIV ALGAETCFGK PLNFTLLEKT 190 IKQLVEQKKA TS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses." Methe B.A., Nelson K.E., Deming J.W., Momen B., Melamud E., Zhang X., Moult J., Madupu R., Nelson W.C., Dodson R.J., Brinkac L.M., Daugherty S.C., Durkin A.S., DeBoy R.T., Kolonay J.F., Sullivan S.A., Zhou L., Davidsen T.M. , Wu M., Huston A.L., Lewis M., Weaver B., Weidman J.F., Khouri H., Utterback T.R., Feldblyum T.V., Fraser C.M. Proc. Natl. Acad. Sci. U.S.A. 102:10913-10918(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 34H / ATCC BAA-681.
[2]	"Crystal structure of signal receiver domain of DNA binding response regulator (merR) from Colwellia psychrerythraea 34H." Patskovsky Y., Romero R., Freeman J., Hu S., Groshong C., Wasserman S.R., Sauder J.M., Burley S.K., Almo S.C. Submitted (MAR-2008) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 61-192.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000083 Genomic DNA. Translation: AAZ24010.1.

RefSeq

YP_271565.1. NC_003910.7.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3CNB	X-ray	2.00	A/B/C	61-192	[»]

ProteinModelPortal

Q47UF8.

SMR

Q47UF8. Positions 66-189.

ModBase

Search...

Protein-protein interaction databases

STRING

167879.CPS_4926.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

AAZ24010; AAZ24010; CPS_4926.

GeneID

3518675.

KEGG

cps:CPS_4926.

PATRIC

21472649. VBIColPsy94388_4497.

Organism-specific databases

CMR

Search...

Phylogenomic databases

eggNOG

NOG138454.

HOGENOM

HOG000133916.

OMA

DATSHIR.

ProtClustDB

CLSK741041.

Enzyme and pathway databases

BioCyc

CPSY167879:GI48-4927-MONOMER.

Family and domain databases

InterPro

IPR011006. CheY-like_superfamily.
IPR009061. DNA-bd_dom_put.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR010093. Xis_DNA-bd.
[Graphical view]

Pfam

PF00072. Response_reg. 1 hit.
[Graphical view]

SMART

SM00448. REC. 1 hit.
[Graphical view]

SUPFAM

SSF52172. CheY_like. 1 hit.
SSF46955. Putativ_DNA_bind. 1 hit.

TIGRFAMs

TIGR01764. excise. 1 hit.

PROSITE

PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

Q47UF8.

Entry information

Entry name

Q47UF8_COLP3

Accession

Primary (citable) accession number: Q47UF8

Entry history

Integrated into UniProtKB/TrEMBL:	September 13, 2005
Last sequence update:	September 13, 2005
Last modified:	May 1, 2013
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)