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Protein
Submitted name:

Putative lipoprotein

Gene

Tfu_0551

Organism
Thermobifida fusca (strain YX)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciTFUS269800:GI42-564-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative lipoproteinImported
Gene namesi
Ordered Locus Names:Tfu_0551Imported
OrganismiThermobifida fusca (strain YX)Imported
Taxonomic identifieri269800 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptosporangialesNocardiopsaceaeThermobifida
Proteomesi
  • UP000000434 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei30 – 4920HelicalSequence analysisAdd
BLAST
Transmembranei55 – 7521HelicalSequence analysisAdd
BLAST
Transmembranei82 – 9918HelicalSequence analysisAdd
BLAST
Transmembranei111 – 12919HelicalSequence analysisAdd
BLAST
Transmembranei141 – 15818HelicalSequence analysisAdd
BLAST
Transmembranei164 – 19027HelicalSequence analysisAdd
BLAST
Transmembranei211 – 23020HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Keywords - PTMi

LipoproteinImported

Interactioni

Protein-protein interaction databases

STRINGi269800.Tfu_0551.

Structurei

3D structure databases

ProteinModelPortaliQ47SH8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini280 – 391112HDInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG41068TY. Bacteria.
ENOG410Y1WY. LUCA.
HOGENOMiHOG000020224.
OMAiLMHDIGQ.
OrthoDBiEOG6R87DZ.

Family and domain databases

Gene3Di1.10.3210.10. 1 hit.
InterProiIPR006674. HD_domain.
[Graphical view]
PfamiPF01966. HD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q47SH8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMNSAPTVAS HIPQRARHGR QWRAVGWTRP LLIGAALVST AVSLLWTAVS
60 70 80 90 100
GFEQPRVALA FGVLVALGEF ARITLPGGRE AAPIATASAM SYAFLFTIIG
110 120 130 140 150
DPVSLPSPQV VAVVAVGMGL GELPHILVGR HPQWGDLARR FLNIAVTTLL
160 170 180 190 200
FRPLIGHIDL DGPLWWLSLL LMAAIVVVVW LADSVAAAAI RADRMRTRFG
210 220 230 240 250
VTLRDEMRAQ VAIGMAVGAS AILMALSVHV MGLTTLLVFT APLLVTQVAF
260 270 280 290 300
RRFAQIRRTY LQTVRALSRV TEVGGYVEAG HSRRVSRLAQ GIGRELGMSE
310 320 330 340 350
STLLELEYAA LMHDIGQLSL RDPIPSGATV LASPREQRSI AELGAAIIRE
360 370 380 390 400
TGVLDGVAEL VRRQCEPYLG DGEAGPPPLG SRIIKVANAF DDLVGGSTDQ
410 420 430 440
ERVDAVLQRL RMDTGHEYDP VVVEALATVL QRPDFDWRSG
Length:440
Mass (Da):47,409
Last modified:September 13, 2005 - v1
Checksum:i9C9DAED32FAB50A4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000088 Genomic DNA. Translation: AAZ54589.1.
RefSeqiWP_011290998.1. NC_007333.1.

Genome annotation databases

EnsemblBacteriaiAAZ54589; AAZ54589; Tfu_0551.
KEGGitfu:Tfu_0551.
PATRICi23901530. VBITheFus33945_0570.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000088 Genomic DNA. Translation: AAZ54589.1.
RefSeqiWP_011290998.1. NC_007333.1.

3D structure databases

ProteinModelPortaliQ47SH8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269800.Tfu_0551.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ54589; AAZ54589; Tfu_0551.
KEGGitfu:Tfu_0551.
PATRICi23901530. VBITheFus33945_0570.

Phylogenomic databases

eggNOGiENOG41068TY. Bacteria.
ENOG410Y1WY. LUCA.
HOGENOMiHOG000020224.
OMAiLMHDIGQ.
OrthoDBiEOG6R87DZ.

Enzyme and pathway databases

BioCyciTFUS269800:GI42-564-MONOMER.

Family and domain databases

Gene3Di1.10.3210.10. 1 hit.
InterProiIPR006674. HD_domain.
[Graphical view]
PfamiPF01966. HD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YXImported.

Entry informationi

Entry nameiQ47SH8_THEFY
AccessioniPrimary (citable) accession number: Q47SH8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: May 11, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.