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Q47SE7

- GLGB_THEFY

UniProt

Q47SE7 - GLGB_THEFY

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Thermobifida fusca (strain YX)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei427 – 4271NucleophileUniRule annotation
Active sitei480 – 4801Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciTFUS269800:GI42-595-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:Tfu_0582
OrganismiThermobifida fusca (strain YX)
Taxonomic identifieri269800 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesStreptosporangineaeNocardiopsaceaeThermobifida
ProteomesiUP000000434: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7497491,4-alpha-glucan branching enzyme GlgBPRO_0000260710Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi269800.Tfu_0582.

Structurei

3D structure databases

ProteinModelPortaliQ47SE7.
SMRiQ47SE7. Positions 141-747.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiVACVFNF.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q47SE7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTARPAVRQP AGLPCPQPCN RYGYPMTNAL LAEIDALVAG THHNPHALLG
60 70 80 90 100
AHPGPEGVWV RALRPLARSV HVLLANGSRV ELPHLHKGVF AGVVPGAEVP
110 120 130 140 150
DYRLVVRYDD GTELTVDDPY RHLPTLGELD IHLIQEGRHE ELWRVLGAHT
160 170 180 190 200
KRFPSVLGDT EGTAFTVWAP NARGVRVIGD FNHWDGTGHP MRSLGSCGVW
210 220 230 240 250
ELFIPGVGDG TRYKYQVLGA DGVWREKADP VAFATQAPPE TASVVFTSRY
260 270 280 290 300
TWQDDEWLTQ RAAADLHRKP MSIYEVHLGS WRPGLSYREL ADQLVDYVRE
310 320 330 340 350
LGFTHVEFLP VAEHPFGGSW GYQVTSYYAP TARFGSPDDF RYLVDRLHQA
360 370 380 390 400
GIGVFLDWVP AHFPKDDWAL SRFDGTALYE HPDPRRGIHP DWDTLIFNYG
410 420 430 440 450
RTEVRNFLVA NALFWLEEFH IDGLRVDAVA SMLYLDYSRE SGQWEPNAYG
460 470 480 490 500
GRENLDAIDF LRELNATAYR RNPGIAMIAE ESTAWPGVTR STDTGGLGFG
510 520 530 540 550
FKWNMGWMHD TLSYLQHDPV HRQYHHNEVT FSMVYAYSEN YVLPLSHDEV
560 570 580 590 600
VHGKRSLLYK MPGNEWQRCA NLRALLAYMW AHPGKQLLFM GNEIAQGDEW
610 620 630 640 650
SHDAGVQWWL LRYPHHAGMR RLVADLNRLY RNTRALWSQD TVPEGFTWLD
660 670 680 690 700
GGDASGNTLS FLRWGDDGSV LACLVNFSGR PHPERRVGLP YAGRWREILN
710 720 730 740
TDAVLYGGSG VSQPGIIEAS EETPWQGQPA SALVTYPPLG VSWLVFDGT
Length:749
Mass (Da):84,375
Last modified:September 13, 2005 - v1
Checksum:iECE7BC0418FFE633
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000088 Genomic DNA. Translation: AAZ54620.1.
RefSeqiYP_288643.1. NC_007333.1.

Genome annotation databases

EnsemblBacteriaiAAZ54620; AAZ54620; Tfu_0582.
GeneIDi3580156.
KEGGitfu:Tfu_0582.
PATRICi23901596. VBITheFus33945_0603.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000088 Genomic DNA. Translation: AAZ54620.1 .
RefSeqi YP_288643.1. NC_007333.1.

3D structure databases

ProteinModelPortali Q47SE7.
SMRi Q47SE7. Positions 141-747.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 269800.Tfu_0582.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAZ54620 ; AAZ54620 ; Tfu_0582 .
GeneIDi 3580156.
KEGGi tfu:Tfu_0582.
PATRICi 23901596. VBITheFus33945_0603.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi VACVFNF.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci TFUS269800:GI42-595-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YX.

Entry informationi

Entry nameiGLGB_THEFY
AccessioniPrimary (citable) accession number: Q47SE7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: September 13, 2005
Last modified: October 29, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3