Q47RH9 (Q47RH9_THEFY) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Mannan endo-1,4-beta-mannosidase. Glycosyl Hydrolase family 5 EMBL AAZ54938.1
EC=3.2.1.78 EMBL AAZ54938.1

Gene names

Ordered Locus Names:

Tfu_0900

Organism

Thermobifida fusca (strain YX) [Complete proteome] [HAMAP]

Taxonomic identifier

269800 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptosporangineae › Nocardiopsaceae › Thermobifida

Protein attributes

Sequence length	453 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL AAZ54938.1
Molecular function	Glycosidase EMBL AAZ54938.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro mannan endo-1,4-beta-mannosidase activity Inferred from electronic annotation. Source: EC polysaccharide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 29	29	Potential EMBL AAZ54938.1
	Chain	30 – 453	424	Potential EMBL AAZ54938.1		PRO_5000099406

Sequences

	Sequence		Length	Mass (Da)
	Q47RH9 [UniParc]. Last modified September 13, 2005. Version 1. Checksum: 46AC15E3AB86E1AB	FASTA	453	48,307
	10 20 30 40 50 60 MRKRLAVAAA TVLALLASVF ALTQPANAAT GLHVKNGRLY EANGQEFIIR GVSHPHNWYP 70 80 90 100 110 120 QHTQAFADIK SHGANTVRVV LSNGVRWSKN GPSDVANVIS LCKQNRLICM LEVHDTTGYG 130 140 150 160 170 180 EQSGASTLDQ AVDYWIELKS VLQGEEDYVL INIGNEPYGN DSATVARWAS DTSAAIQRLR 190 200 210 220 230 240 AAGFEHTLVV DAPNWGQDWT NTMRNNADQV YASDPTGNTV FSIHMYGVYS QASTITSYLE 250 260 270 280 290 300 HFVNAGLPLI IGEFGHDHSD GNPDEDTIMA EAERLKLGYI GWSWSGNGGG VEYLDMVYNF 310 320 330 340 350 360 DGDNLSPWGE RIFYGPNGIA STAKEATIFG GSQPGPTEEP TEEPTEEPTP TPPPAEGDCT 370 380 390 400 410 420 ATYATIGSWG GGFQGEVTVT AGDSAISSWQ VSWTFPGGQS VAHGWNASFS GTSTVTASNL 430 440 450 SYNGQLGAGQ SATFGFIGSG DAPSSLTLSC TAR

References

[1]

"Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX." Lykidis A., Mavromatis K., Ivanova N., Anderson I., Land M., DiBartolo G., Martinez M., Lapidus A., Lucas S., Copeland A., Richardson P., Wilson D.B., Kyrpides N. J. Bacteriol. 189:2477-2486(2007) [PubMed: 17209016] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000088 Genomic DNA. Translation: AAZ54938.1.
RefSeq	YP_288961.1. NC_007333.1.
3D structure databases
ProteinModelPortal	Q47RH9.
SMR	Q47RH9. Positions 29-330.
ModBase	Search...
Protein-protein interaction databases
STRING	Q47RH9.
Protein family/group databases
CAZy	CBM2. Carbohydrate-Binding Module Family 2. GH5. Glycoside Hydrolase Family 5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3579454.
GenomeReviews	Gene locus Tfu_0900 in contig CP000088_GR.
KEGG	tfu:Tfu_0900.
NMPDR	fig|269800.4.peg.682.
PATRIC	23902272. VBITheFus33945_0936.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2730.
HOGENOM	HBG392594.
OMA	THTLMID.
ProtClustDB	CLSK2526228.
Enzyme and pathway databases
BioCyc	TFUS269800:TFU_0900-MONOMER.
Family and domain databases
InterPro	IPR008965. Carb-bd_dom. IPR012291. CBD_carb-bd_dom. IPR001919. Cellulose-bd_dom_fam2_bac. IPR001547. Glyco_hydro_5. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Gene3D	G3DSA:2.60.40.290. CBD_carb_bd. 1 hit. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KO	K01218.
Pfam	PF00553. CBM_2. 1 hit. PF00150. Cellulase. 1 hit. [Graphical view]
SMART	SM00637. CBD_II. 1 hit. [Graphical view]
SUPFAM	SSF49384. Cellul_bind. 1 hit. SSF51445. Glyco_hydro_cat. 1 hit.
PROSITE	PS51173. CBM2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q47RH9_THEFY

Accession

Primary (citable) accession number: Q47RH9

Entry history

Integrated into UniProtKB/TrEMBL:	September 13, 2005
Last sequence update:	September 13, 2005
Last modified:	January 25, 2012
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)