Q47QW4 (Q47QW4_THEFY) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL AAZ55153.1

Gene names

Ordered Locus Names:

Tfu_1115

Organism

Thermobifida fusca (strain YX) [Complete proteome] [HAMAP]

Taxonomic identifier

269800 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptosporangineae › Nocardiopsaceae › Thermobifida

Protein attributes

Sequence length	240 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. PIRSR PIRSR004848-1
Sequence similarities	Belongs to the UPF0001 family. RuleBase RU004514

Ontologies

Keywords
Ligand	Pyridoxal phosphate PIRSR PIRSR004848-1
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Amino acid modifications
	Modified residue	42	1	N6-(pyridoxal phosphate)lysine By similarity PIRSR PIRSR004848-1

Sequences

	Sequence		Length	Mass (Da)
	Q47QW4 [UniParc]. Last modified September 13, 2005. Version 1. Checksum: DF16D8F2F15D68A2	FASTA	240	25,741
	10 20 30 40 50 60 MSGEARRAEL AANLERVRER VAAACAAAGR KPEEITIVAV TKQYPASDVR LLAELGIRDI 70 80 90 100 110 120 GENRDQEAAP KAAECRDLDL TWHFVGQLQT NKARSVARYA DVVHSVDRMR LVTELGRRVR 130 140 150 160 170 180 AAERTVTCLI QVNLDPDSEQ GVLGPRGGAD PGDVPALAEA VEAEEGLALG GVMAVAPRQG 190 200 210 220 230 240 DPREAFDRLK TVAEELQARY PHATVISAGM SGDLEAAIER GATHLRIGTA LLGNRRLIVG

References

[1]

"Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX." Lykidis A., Mavromatis K., Ivanova N., Anderson I., Land M., DiBartolo G., Martinez M., Lapidus A., Lucas S., Copeland A., Richardson P., Wilson D.B., Kyrpides N. J. Bacteriol. 189:2477-2486(2007) [PubMed: 17209016] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000088 Genomic DNA. Translation: AAZ55153.1.
RefSeq	YP_289176.1. NC_007333.1.
3D structure databases
ProteinModelPortal	Q47QW4.
ModBase	Search...
Protein-protein interaction databases
STRING	Q47QW4.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3579297.
GenomeReviews	Gene locus Tfu_1115 in contig CP000088_GR.
KEGG	tfu:Tfu_1115.
NMPDR	fig|269800.4.peg.363.
PATRIC	23902726. VBITheFus33945_1163.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0325.
HOGENOM	HBG289671.
OMA	HGSTMVR.
PhylomeDB	Q47QW4.
ProtClustDB	CLSK2769179.
Enzyme and pathway databases
BioCyc	TFUS269800:TFU_1115-MONOMER.
Family and domain databases
InterPro	IPR001608. Ala_racemase_N. IPR011078. UPF0001. [Graphical view]
KO	K06997.
PANTHER	PTHR10146. PP_YBL036C. 1 hit.
Pfam	PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PIRSF	PIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMs	TIGR00044. TIGR00044. 1 hit.
PROSITE	PS01211. UPF0001. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q47QW4_THEFY

Accession

Primary (citable) accession number: Q47QW4

Entry history

Integrated into UniProtKB/TrEMBL:	September 13, 2005
Last sequence update:	September 13, 2005
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)