Q47Q25 (Q47Q25_THEFY) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional regulator, GntR family EMBL AAZ55444.1

Gene names

Ordered Locus Names:

Tfu_1406

Organism

Thermobifida fusca (strain YX) [Complete proteome] [HAMAP] EMBL AAZ55444.1

Taxonomic identifier

269800 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptosporangineae › Nocardiopsaceae › Thermobifida › Thermomonospora fusca

Protein attributes

Sequence length	124 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH gntR-type DNA-binding domain. SAAS SAAS000524 RuleBase RU000706

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS000524 RuleBase RU000706
Ligand	DNA-binding SAAS SAAS000524 RuleBase RU000706
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q47Q25 [UniParc]. Last modified September 13, 2005. Version 1. Checksum: F6378B689DDAA61F	FASTA	124	13,211
	10 20 30 40 50 60 MATDFVRIDP NSKVPPYEQI RAAVANAAAS GRLPVGYKLP TVRALASELS VAVNTAARAY 70 80 90 100 110 120 RELEQAGVVE TRGRSGTFIA AGGDRQRAEA LAAARRYAET VSRLGISQQE AVDIVRAAVE NLTR

References

[1]

"Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX." Lykidis A., Mavromatis K., Ivanova N., Anderson I., Land M., DiBartolo G., Martinez M., Lapidus A., Lucas S., Copeland A., Richardson P., Wilson D.B., Kyrpides N. J. Bacteriol. 189:2477-2486(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: YX.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000088 Genomic DNA. Translation: AAZ55444.1.
RefSeq	YP_289467.1. NC_007333.1.
3D structure databases
ProteinModelPortal	Q47Q25.
ModBase	Search...
Protein-protein interaction databases
STRING	269800.Tfu_1406.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAZ55444; AAZ55444; Tfu_1406.
GeneID	3580957.
KEGG	tfu:Tfu_1406.
PATRIC	23903362. VBITheFus33945_1506.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1725.
HOGENOM	HOG000259573.
OMA	KQGTFIA.
ProtClustDB	CLSK2769255.
Enzyme and pathway databases
BioCyc	TFUS269800:GI42-1415-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR000524. Tscrpt_reg_HTH_GntR. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00392. GntR. 1 hit. [Graphical view]
SMART	SM00345. HTH_GNTR. 1 hit. [Graphical view]
PROSITE	PS50949. HTH_GNTR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q47Q25_THEFY

Accession

Primary (citable) accession number: Q47Q25

Entry history

Integrated into UniProtKB/TrEMBL:	September 13, 2005
Last sequence update:	September 13, 2005
Last modified:	May 29, 2013
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)