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Protein
Submitted name:

Transcriptional regulator, TetR family

Gene

Tfu_2799

Organism
Thermobifida fusca (strain YX)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciTFUS269800:GI42-2837-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, TetR familyImported
Gene namesi
Ordered Locus Names:Tfu_2799Imported
OrganismiThermobifida fusca (strain YX)Imported
Taxonomic identifieri269800 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptosporangialesNocardiopsaceaeThermobifida
Proteomesi
  • UP000000434 Componenti: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3DCFX-ray2.50A/B1-217[»]
ProteinModelPortaliQ47L40.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ47L40.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini29 – 8961HTH tetR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105WE0. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000249907.
OMAiHRATLNE.
OrthoDBiEOG6PKFD1.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q47L40-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQRSDSDHV MAEATTDKRQ GHTRGRTGND RRTQIIKVAT ELFREKGYYA
60 70 80 90 100
TSLDDIADRI GFTKPAIYYY FKSKEDVLFA IVNSIVDEAL ERFHAIAAGP
110 120 130 140 150
GSPGERIHAL LVEHTRTILR NLDANTVFYN ERGLLSPERE REMRKREREY
160 170 180 190 200
TEIMQRLYAE GVATGELLDV DPTVATATLL GAAIWTYRWY DPEGRLSADE
210
VVEQITRLLL NGYRRPA
Length:217
Mass (Da):24,799
Last modified:September 13, 2005 - v1
Checksum:iFA7325E8D4E6E52E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000088 Genomic DNA. Translation: AAZ56832.1.

Genome annotation databases

EnsemblBacteriaiAAZ56832; AAZ56832; Tfu_2799.
KEGGitfu:Tfu_2799.
PATRICi23906346. VBITheFus33945_2977.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000088 Genomic DNA. Translation: AAZ56832.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3DCFX-ray2.50A/B1-217[»]
ProteinModelPortaliQ47L40.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ56832; AAZ56832; Tfu_2799.
KEGGitfu:Tfu_2799.
PATRICi23906346. VBITheFus33945_2977.

Phylogenomic databases

eggNOGiENOG4105WE0. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000249907.
OMAiHRATLNE.
OrthoDBiEOG6PKFD1.

Enzyme and pathway databases

BioCyciTFUS269800:GI42-2837-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ47L40.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YXImported.
  2. "Crystal structure of transcriptional regulator of the TetR/AcrR family (YP_290855.1) from THERMOBIFIDA FUSCA YX-ER1 at 2.50 A resolution."
    Joint Center for Structural Genomics (JCSG)
    Submitted (JUN-2008) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.50 ANGSTROMS).

Entry informationi

Entry nameiQ47L40_THEFY
AccessioniPrimary (citable) accession number: Q47L40
Entry historyi
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: March 16, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.