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Protein
Submitted name:

PAS protein

Gene

Daro_0729

Organism
Dechloromonas aromatica (strain RCB)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciDARO159087:GI5B-753-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
PAS proteinImported
Gene namesi
Ordered Locus Names:Daro_0729Imported
OrganismiDechloromonas aromatica (strain RCB)Imported
Taxonomic identifieri159087 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaRhodocyclalesRhodocyclaceaeDechloromonas
ProteomesiUP000000550 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi159087.Daro_0729.

Structurei

3D structure databases

ProteinModelPortaliQ47I46.
SMRiQ47I46. Positions 674-897.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG2202.
HOGENOMiHOG000148074.
KOiK03406.
OMAiTHRATIR.
OrthoDBiEOG6G4VQG.

Family and domain databases

InterProiIPR003122. Chemotax_Me-accpt_rcpt_lig-bd.
IPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
IPR001610. PAC.
IPR000014. PAS.
IPR013655. PAS_fold_3.
IPR000727. T_SNARE_dom.
[Graphical view]
PfamiPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
PF08447. PAS_3. 1 hit.
PF02203. TarH. 1 hit.
[Graphical view]
SMARTiSM00304. HAMP. 2 hits.
SM00283. MA. 1 hit.
SM00086. PAC. 1 hit.
SM00091. PAS. 2 hits.
[Graphical view]
SUPFAMiSSF55785. SSF55785. 1 hit.
TIGRFAMsiTIGR00229. sensory_box. 1 hit.
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 2 hits.
PS50112. PAS. 1 hit.
PS50192. T_SNARE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q47I46-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTNLPVTTV EQHLRDDTLI VSKTDLKGRI TYINRDFLDI SGFTEQELIG
60 70 80 90 100
EPHNLVRHPE MPPEAFEDLW RDLKDGRPWT GMVKNRCKNG DYYWVLATVT
110 120 130 140 150
PIREGGEILG YMSVRRKASA QQIQAAEEAY RLFREKRQGS LQIRHGAAVK
160 170 180 190 200
GGPGLLSALS LKSRMAAGFA VILLVVAVVA GLGLWGMGRS DDAVARLYSS
210 220 230 240 250
RLEPVQELAA IGKLMADNRS QVLLAFQHDP ASPNAKSHDH SVDKHLGVID
260 270 280 290 300
KNIGIITGHW ERYSKAIASD EHRQLADAYV AARKVYVTEG LLAAKAAIAT
310 320 330 340 350
GRFDEANDIL LKKLNPAYEE ASKRADDLYQ LQISRGKTQL EETDKAYQQF
360 370 380 390 400
RIIVIAIVLA ALAFGALVAW SIMRSVMRPL DDIIATFQSL ARGDYTRNVD
410 420 430 440 450
IARNDELGKV MQGLQSMQIQ QGFNVAEATR VGEENLRIKI GLDNVATNVM
460 470 480 490 500
IADDGLNIIY MNHAVTQMFA AVESDIRKDL PQFSAASLMG SNIDIFHKSP
510 520 530 540 550
AHQRGMLERL TGTHRATIRL GGRVFALTVT PVINTRGGRL GFAVEWLDRT
560 570 580 590 600
NEVAVEEEVN QIVSAAANGD FTKRVSDAGK TGFFLTLAGD LNRLLETSQR
610 620 630 640 650
GLEDVVVVLS AMADGDLTKT IEAEYAGTFG QLKDDANTTV ARLQEIVGQI
660 670 680 690 700
KESTDAINTA AKEIASGNQD LSSRTEEQAS SLEETASSME QLTSTVKQNA
710 720 730 740 750
DNARQANELA GNAQRVAVKG GEVVGQVVDT MSAIHQSSSK IADIIGVIDG
760 770 780 790 800
IAFQTNILAL NAAVEAARAG EQGRGFAVVA TEVRNLAQRS AAAAKEIKGL
810 820 830 840 850
ISDSVEKVET GNKLVDQAGR TMEEVVSSIK RVAKIMGDIS DASREQSSGI
860 870 880 890 900
EQVSLAVSQM DEVTQQNAAL VEEAAAAAES LEEQAHNLAQ AVSVFKVANA
910 920 930 940
GGMPRLEAPR TSQRASVPQA PRGERIGARK VQALPSSLDD EWEEF
Length:945
Mass (Da):102,570
Last modified:September 13, 2005 - v1
Checksum:iC15437FFF4D064D6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000089 Genomic DNA. Translation: AAZ45485.1.
RefSeqiWP_011286494.1. NC_007298.1.
YP_283955.1. NC_007298.1.

Genome annotation databases

EnsemblBacteriaiAAZ45485; AAZ45485; Daro_0729.
KEGGidar:Daro_0729.
PATRICi21600084. VBIDecAro89105_0735.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000089 Genomic DNA. Translation: AAZ45485.1.
RefSeqiWP_011286494.1. NC_007298.1.
YP_283955.1. NC_007298.1.

3D structure databases

ProteinModelPortaliQ47I46.
SMRiQ47I46. Positions 674-897.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi159087.Daro_0729.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ45485; AAZ45485; Daro_0729.
KEGGidar:Daro_0729.
PATRICi21600084. VBIDecAro89105_0735.

Phylogenomic databases

eggNOGiCOG2202.
HOGENOMiHOG000148074.
KOiK03406.
OMAiTHRATIR.
OrthoDBiEOG6G4VQG.

Enzyme and pathway databases

BioCyciDARO159087:GI5B-753-MONOMER.

Family and domain databases

InterProiIPR003122. Chemotax_Me-accpt_rcpt_lig-bd.
IPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
IPR001610. PAC.
IPR000014. PAS.
IPR013655. PAS_fold_3.
IPR000727. T_SNARE_dom.
[Graphical view]
PfamiPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
PF08447. PAS_3. 1 hit.
PF02203. TarH. 1 hit.
[Graphical view]
SMARTiSM00304. HAMP. 2 hits.
SM00283. MA. 1 hit.
SM00086. PAC. 1 hit.
SM00091. PAS. 2 hits.
[Graphical view]
SUPFAMiSSF55785. SSF55785. 1 hit.
TIGRFAMsiTIGR00229. sensory_box. 1 hit.
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 2 hits.
PS50112. PAS. 1 hit.
PS50192. T_SNARE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation."
    Salinero K.K., Keller K., Feil W.S., Feil H., Trong S., Di Bartolo G., Lapidus A.
    BMC Genomics 10:351-351(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RCBImported.

Entry informationi

Entry nameiQ47I46_DECAR
AccessioniPrimary (citable) accession number: Q47I46
Entry historyi
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: May 27, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.