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Protein
Submitted name:

Assimilatory nitrite reductase (NAD(P)H) large subunit

Gene

Daro_0816

Organism
Dechloromonas aromatica (strain RCB)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. 4 iron, 4 sulfur cluster binding Source: UniProtKB-KW
  2. flavin adenine dinucleotide binding Source: InterPro
  3. heme binding Source: InterPro
  4. metal ion binding Source: UniProtKB-KW
  5. NADP binding Source: InterPro
  6. nitrite reductase [NAD(P)H] activity Source: UniProtKB-EC

GO - Biological processi

  1. nitrate assimilation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseSAAS annotationImported

Keywords - Ligandi

4Fe-4SSAAS annotation, HemeSAAS annotation, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciDARO159087:GI5B-848-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Assimilatory nitrite reductase (NAD(P)H) large subunitImported (EC:1.7.1.4Imported)
Gene namesi
Ordered Locus Names:Daro_0816Imported
OrganismiDechloromonas aromatica (strain RCB)Imported
Taxonomic identifieri159087 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaRhodocyclalesRhodocyclaceaeDechloromonas
ProteomesiUP000000550: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi159087.Daro_0816.

Structurei

3D structure databases

ProteinModelPortaliQ47HV9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1251.
HOGENOMiHOG000196165.
KOiK00362.
OMAiERQQHRP.
OrthoDBiEOG6G4VT5.

Family and domain databases

InterProiIPR007419. BFD-like_2Fe2S-bd_dom.
IPR013027. FAD_pyr_nucl-diS_OxRdtase.
IPR005117. NiRdtase/SiRdtase_haem-b_fer.
IPR012744. Nitri_red_NirB.
IPR017121. Nitrite_Rdtase_lsu.
IPR006067. NO2/SO3_Rdtase_4Fe4S_dom.
IPR006066. NO2/SO3_Rdtase_FeS/sirohaem_BS.
IPR023753. Pyr_nucl-diS_OxRdtase_FAD/NAD.
IPR001327. Pyr_OxRdtase_NAD-bd_dom.
[Graphical view]
PfamiPF04324. Fer2_BFD. 2 hits.
PF01077. NIR_SIR. 1 hit.
PF03460. NIR_SIR_ferr. 1 hit.
PF00070. Pyr_redox. 1 hit.
PF07992. Pyr_redox_2. 1 hit.
[Graphical view]
PIRSFiPIRSF037149. NirB. 1 hit.
PRINTSiPR00368. FADPNR.
PR00397. SIROHAEM.
SUPFAMiSSF55124. SSF55124. 1 hit.
TIGRFAMsiTIGR02374. nitri_red_nirB. 1 hit.
PROSITEiPS00365. NIR_SIR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q47HV9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSKPRLVLIG NGMAGVRTVE ELLKIKPDHY DITIFGAEPH PNYNRILLSP
60 70 80 90 100
VLAGEMTISE IVLNELEWYK ENNIKLHTGK QIKTIDRVKR KVIAEDGTEE
110 120 130 140 150
EYDRLLIATG STPFMLPIPG NDLPGVIGYR DIKDTDEMIE AAKLHKHAVV
160 170 180 190 200
IGGGLLGLEA ANGLKLRGMD VTVVHLGPWL LERQLDEVAG KMLQKSLEDK
210 220 230 240 250
GLKFLLQKQT EMLVQGESGR VAAVRFKDGM TIPADLVVMA AGIRPNYALA
260 270 280 290 300
ESSGIYCNRG IVVNDTMQTY DPKVYAVGEC VTHRGIAYGL VAPLFEQAKV
310 320 330 340 350
AANHLAGYGI GRYTGSVTST KLKVTGIDLF SAGNYMGGEG TEEIVLNDPY
360 370 380 390 400
GGVYKKLVLK DNKLVGGVMY GDTADGPWYF QLLKDGRDIH DIRDQLIFGQ
410 420 430 440 450
SLVGDVGHAG NSKAADMPDS AEVCGCNGIT KGVIVQAIKA KGLFTLDEVK
460 470 480 490 500
KHTKAASSCG SCAGLVEQIL ASTIGGAYTP AASDKKPVCG CTEQSHKAVR
510 520 530 540 550
EAILNQHLIT KEAVFAALEW KTPNGCDKCR PAVNYYLIST WPHEAKDDPQ
560 570 580 590 600
SRFINERSHA NIQKDGTYSV VPRMWGGLTN PKELRAIADA AEKYNVPTVK
610 620 630 640 650
VTGGQRIDLL GVKKEDLPAM WADLNAAGMV SGHAYGKSIR TVKTCVGMEH
660 670 680 690 700
CRFGTQLAMS MGVKLEKMLF DMYAPHKVKL AVSGCPRNCA EAGIKDVGII
710 720 730 740 750
GVDSGYEIYI AGNGGIKTEV AQFLCKVSSD EDVMEYSGAF LQLYRLEGWY
760 770 780 790 800
LERTCHYLER VGMDYIKGRI LEDEEGRKAL YAALLDSLKD AKDPWATSRE
810
PEAIKQFIPI MVEA
Length:814
Mass (Da):88,829
Last modified:September 13, 2005 - v1
Checksum:iD170CEF347A6A1A7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000089 Genomic DNA. Translation: AAZ45572.1.
RefSeqiYP_284042.1. NC_007298.1.

Genome annotation databases

EnsemblBacteriaiAAZ45572; AAZ45572; Daro_0816.
GeneIDi3569441.
KEGGidar:Daro_0816.
PATRICi21600254. VBIDecAro89105_0813.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000089 Genomic DNA. Translation: AAZ45572.1.
RefSeqiYP_284042.1. NC_007298.1.

3D structure databases

ProteinModelPortaliQ47HV9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi159087.Daro_0816.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ45572; AAZ45572; Daro_0816.
GeneIDi3569441.
KEGGidar:Daro_0816.
PATRICi21600254. VBIDecAro89105_0813.

Phylogenomic databases

eggNOGiCOG1251.
HOGENOMiHOG000196165.
KOiK00362.
OMAiERQQHRP.
OrthoDBiEOG6G4VT5.

Enzyme and pathway databases

BioCyciDARO159087:GI5B-848-MONOMER.

Family and domain databases

InterProiIPR007419. BFD-like_2Fe2S-bd_dom.
IPR013027. FAD_pyr_nucl-diS_OxRdtase.
IPR005117. NiRdtase/SiRdtase_haem-b_fer.
IPR012744. Nitri_red_NirB.
IPR017121. Nitrite_Rdtase_lsu.
IPR006067. NO2/SO3_Rdtase_4Fe4S_dom.
IPR006066. NO2/SO3_Rdtase_FeS/sirohaem_BS.
IPR023753. Pyr_nucl-diS_OxRdtase_FAD/NAD.
IPR001327. Pyr_OxRdtase_NAD-bd_dom.
[Graphical view]
PfamiPF04324. Fer2_BFD. 2 hits.
PF01077. NIR_SIR. 1 hit.
PF03460. NIR_SIR_ferr. 1 hit.
PF00070. Pyr_redox. 1 hit.
PF07992. Pyr_redox_2. 1 hit.
[Graphical view]
PIRSFiPIRSF037149. NirB. 1 hit.
PRINTSiPR00368. FADPNR.
PR00397. SIROHAEM.
SUPFAMiSSF55124. SSF55124. 1 hit.
TIGRFAMsiTIGR02374. nitri_red_nirB. 1 hit.
PROSITEiPS00365. NIR_SIR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation."
    Salinero K.K., Keller K., Feil W.S., Feil H., Trong S., Di Bartolo G., Lapidus A.
    BMC Genomics 10:351-351(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RCBImported.

Entry informationi

Entry nameiQ47HV9_DECAR
AccessioniPrimary (citable) accession number: Q47HV9
Entry historyi
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: February 4, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.