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Q47E58 (Q47E58_DECAR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 2 HAMAP MF_00163
Short name=PDF 2 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 2 HAMAP MF_00163
Gene names
Name:def2 HAMAP MF_00163
Ordered Locus Names:Daro_2132
OrganismDechloromonas aromatica (strain RCB) [Complete proteome] [HAMAP] EMBL AAZ46873.1
Taxonomic identifier159087 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Rhodocyclales › Rhodocyclaceae › Dechloromonas

Protein attributes

Sequence length204 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1711 By similarity HAMAP MF_00163
Metal binding1281Iron By similarity HAMAP MF_00163
Metal binding1701Iron By similarity HAMAP MF_00163
Metal binding1741Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
Q47E58 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: FDA7B58C6EC42CB5

FASTA20422,926
        10         20         30         40         50         60 
MCLCSTMGFV DSRRLWCHWP GQFWKVTAMA ARPILRMGEP LLFEVAKAVT EFGTSELRAL 

        70         80         90        100        110        120 
IEDMFDSMEA AGGVGLAAPQ IGIGLQMVIF GFEKSERYPD AEAVPLTVLI NPLITPVGDE 

       130        140        150        160        170        180 
EELGWEGCLS VPGLRGEVPR HTRIRYQGFD PEGTPIDRTV EGFHARVVQH ECDHLIGRLY 

       190        200 
PSRIRDFSRF GFTDILFPEL VRED

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References

[1]"Complete sequence of Dechloromonas aromatica RCB."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Di Bartolo G., Trong S., Kellar K., Schmutz J., Larimer F., Land M., Ivanova N., Richardson P.
Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000089 Genomic DNA. Translation: AAZ46873.1.
RefSeqYP_285343.1. NC_007298.1.

3D structure databases

ProteinModelPortalQ47E58.
SMRQ47E58. Positions 30-195.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ47E58.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3567548.
GenomeReviewsGene locus Daro_2132 in contig CP000089_GR.
KEGGdar:Daro_2132.
NMPDRfig|159087.4.peg.2171.
PATRIC21602950. VBIDecAro89105_2131.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0242.
HOGENOMHBG665227.
OMAPRFKHIC.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ47E58_DECAR
AccessionPrimary (citable) accession number: Q47E58
Entry history
Integrated into UniProtKB/TrEMBL: September 13, 2005
Last sequence update: September 13, 2005
Last modified: December 14, 2011
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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