Reviewed, UniProtKB/Swiss-Prot Q47C26 (RLMF_DECAR)

Names and origin

Protein names

Recommended name:
    Ribosomal RNA large subunit methyltransferase F
    EC=2.1.1.48
Alternative name(s):
    23S rRNA mA1618 methyltransferase
    rRNA adenine N-6-methyltransferase

Gene names

Name:	rlmF
Ordered Locus Names:	Daro_2875

Organism

Dechloromonas aromatica (strain RCB) [Complete proteome] [HAMAP]

Taxonomic identifier

159087 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Rhodocyclales › Rhodocyclaceae › Dechloromonas

Protein attributes

Sequence length	340 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Specifically methylates the adenine in position 1618 of 23S rRNA By similarity.
Catalytic activity	S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine. HAMAP MF_01848
Subcellular location	Cytoplasm Potential.
Sequence similarities	Belongs to the methyltransferase superfamily. METT10D/rlmF family.

Ontologies

Keywords
Biological process	rRNA processing
Cellular component	Cytoplasm
Ligand	S-adenosyl-L-methionine
Molecular function	Methyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	rRNA modification Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	rRNA (adenine-N6-)-methyltransferase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 340	340	Ribosomal RNA large subunit methyltransferase F HAMAP MF_01848		PRO_0000349901

Sequences

	Sequence		Length	Mass (Da)
	Q47C26-1 [UniParc]. Last modified September 13, 2005. Version 1. Checksum: F2E4F0943921A5D7	FASTA	340	36,947
	10 20 30 40 50 60 MHPRNKNAEG YDFAALAATS AALAKHIKTT QAGTASIDFA NPAAVKMLNR AILMHHYGVK 70 80 90 100 110 120 GWDIPAGYLC PPIPGRADYI HSVADLLATC NKKNIPSGPG VRVLDIGVGA NMVYPLIGHA 130 140 150 160 170 180 EYGWSFLGVD IDEAALANAQ SIIGKNPELA SDIELRHQPV WDNIFTGLLR SGEVFDLSIC 190 200 210 220 230 240 NPPFHNSPDD VHAVSQRKWN NLNKPGAKRG AAEPRLNFGG GGSELWCNGG ERAFVKRMIE 250 260 270 280 290 300 QSCNIPKRVM WFTSLLSQGD NLPHIEAALK KAKVVESRII PMAQGQKQSR LVAWTFCGNG 310 320 330 340 EREKWRRERW TAAPSYAVPA FAEQTAPLTA EATPPAADPV

References

[1]

"Complete sequence of Dechloromonas aromatica RCB." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Di Bartolo G., Trong S., Kellar K., Schmutz J., Larimer F., Land M., Ivanova N., Richardson P. Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000089 Genomic DNA. Translation: AAZ47605.1.
RefSeq	YP_286075.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	3566339.
GenomeReviews	Gene locus Daro_2875 in contig CP000089_GR.
KEGG	dar:Daro_2875.
NMPDR	fig|159087.4.peg.4097.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q47C26.
OMA	Q47C26. LNFGGQN.
Family and domain databases
HAMAP	MF_01848. [Tree]
InterPro	IPR016909. S-AdoMet-dep_MeTrfase_YbiN_prd. IPR010286. SAM-Mtase_prd. [Graphical view]
PANTHER	PTHR13393. DUF890. 1 hit.
Pfam	PF05971. Methyltransf_10. 1 hit. [Graphical view]
PIRSF	PIRSF029038. Mtase_YbiN_prd. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RLMF_DECAR

Accession

Primary (citable) accession number: Q47C26

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 2, 2008
Last sequence update:	September 13, 2005
Last modified:	June 16, 2009
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)