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Q47C25 (PSD_DECAR) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Phosphatidylserine decarboxylase proenzyme
EC=4.1.1.65

Cleaved into the following 2 chains:

  1. Phosphatidylserine decarboxylase alpha chain
  2. Phosphatidylserine decarboxylase beta chain
Gene names
Name:psd
Ordered Locus Names:Daro_2876
OrganismDechloromonas aromatica (strain RCB) [Complete proteome] [HAMAP]
Taxonomic identifier159087 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Rhodocyclales › Rhodocyclaceae › Dechloromonas

Protein attributes

Sequence length282 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphatidyl-L-serine = phosphatidylethanolamine + CO2. HAMAP MF_00662

Cofactor

Pyruvoyl group By similarity. HAMAP MF_00662

Pathway

Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from CDP-diacylglycerol: step 2/2. HAMAP MF_00662

Sequence similarities

Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily.

Ontologies

Keywords
   Biological processPhospholipid biosynthesis
   LigandPyruvate
   Molecular functionDecarboxylase
Lyase
   PTMZymogen
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processphospholipid biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionphosphatidylserine decarboxylase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 247247Phosphatidylserine decarboxylase beta chain By similarity
PRO_0000262103
Chain248 – 28235Phosphatidylserine decarboxylase alpha chain By similarity
PRO_0000262104

Sites

Site247 – 2482Cleavage (non-hydrolytic) By similarity

Amino acid modifications

Modified residue2481Pyruvic acid (Ser) By similarity

Sequences

Sequence LengthMass (Da)Tools
Q47C25 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: 93372E339298D391

FASTA28231,194
        10         20         30         40         50         60 
MSDRLAVLPQ YLIPKQALTV LAGKLASAKA GGLTTSVIRW FVRRYNVNMT EAANPDIASY 

        70         80         90        100        110        120 
KSFNEFFTRP LKDGARPAAD ADFLCPVDGA ISQYGTIDRD QIFQAKGHSY STTALVGGDR 

       130        140        150        160        170        180 
KLAEQFENGS FATLYLSPRD YHRIHMPCDG KLTRMIYVPG ALFSVNPTTA RGVPGLFARN 

       190        200        210        220        230        240 
ERVICVFESE FGSFVLTLVG ATIVGSMATV WHGTINPPRP GVIREWRYDE QNIRLKKGQE 

       250        260        270        280 
MGRFLLGSTV VMLFPKNTLA FNPDWSPSRA IRMGEQMGSN AN

« Hide

References

[1]"Complete sequence of Dechloromonas aromatica RCB."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Di Bartolo G., Trong S., Kellar K., Schmutz J., Larimer F., Land M., Ivanova N., Richardson P.
Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RCB.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000089 Genomic DNA. Translation: AAZ47606.1.
RefSeqYP_286076.1. NC_007298.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ47C25.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3566340.
GenomeReviewsGene locus Daro_2876 in contig CP000089_GR.
KEGGdar:Daro_2876.
NMPDRfig|159087.4.peg.2484.
PATRIC21604420. VBIDecAro89105_2857.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0688.
HOGENOMHBG302256.
OMASMATVWH.
PhylomeDBQ47C25.
ProtClustDBPRK00044.

Enzyme and pathway databases

BioCycDARO159087:DARO_2876-MONOMER.

Family and domain databases

HAMAPMF_00662. PS_decarb_type1.
[Tree]
InterProIPR003817. PS_Dcarbxylase.
IPR005221. PS_decarb.
[Graphical view]
KOK01613.
PANTHERPTHR10067. PS_decarb. 1 hit.
PfamPF02666. PS_Dcarbxylase. 1 hit.
[Graphical view]
TIGRFAMsTIGR00163. PS_decarb. 1 hit.
ProtoNetSearch...

Entry information

Entry namePSD_DECAR
AccessionPrimary (citable) accession number: Q47C25
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: September 13, 2005
Last modified: January 25, 2012
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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