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Reviewed, UniProtKB/Swiss-Prot Q479T3 (HEM6_DECAR)

Last modified June 16, 2009. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Coproporphyrinogen-III oxidase, aerobic
      Short name=Coproporphyrinogenase
      Short name=Coprogen oxidase
    EC=1.3.3.3
Gene names
Name: hemF
Ordered Locus Names: Daro_3669
OrganismDechloromonas aromatica (strain RCB) [Complete proteome] [HAMAP]
Taxonomic identifier159087 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Rhodocyclales › Rhodocyclaceae › Dechloromonas

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Protein attributes

Sequence length298 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

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General annotation (Comments)

Catalytic activity

Coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O. HAMAP MF_00333

Pathway

Porphyrin metabolism; protoporphyrin-IX biosynthesis; protoporphyrinogen-IX from coproporphyrinogen-III (O2 route): step 1/1. HAMAP MF_00333

Subcellular location

Cytoplasm By similarity.

Sequence similarities

Belongs to the aerobic coproporphyrinogen-III oxidase family.

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Ontologies

Keywords
   Biological processPorphyrin biosynthesis
   Cellular componentCytoplasm
   Molecular functionOxidoreductase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processoxidation reduction

Inferred from electronic annotation. Source: UniProtKB-KW

porphyrin biosynthetic process

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functioncoproporphyrinogen oxidase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 298298Coproporphyrinogen-III oxidase, aerobic
PRO_1000019467

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Sequences

Sequence LengthMass (Da)Tools
Q479T3-1 [UniParc].

Last modified September 13, 2005. Version 1.
Checksum: BB21B8689491EB94

FASTA29834,231
        10         20         30         40         50         60 
MDTTRLKDFF TGLQSRIVAE LEAFDGQPFR TDSWVRPEGG GGISRLIEEG DFFERGGVNF 

        70         80         90        100        110        120 
SHVTGKSLPA SATAVRPQLA GRSWEAMGVS LVLHPRNPYC PTAHMNVRCF VASKEGEEDV 

       130        140        150        160        170        180 
WWFGGGMDMT PYYGQREDVV HFHQTCKDAL APFGDEVYPK YKHWCDEYFF LKHRNEPRGV 

       190        200        210        220        230        240 
GGVFFDDLNE GGFERCFELT QAVGNAFTKA YLPVLAKRRE MPYDERERDF QAYRRGRYVE 

       250        260        270        280        290 
FNLVWDRGTL FGLQSGGRTE SILMSLPPIV KWRYDWQPEA GSPEAELYEV FLKPQDWA

« Hide

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References

[1]"Complete sequence of Dechloromonas aromatica RCB."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Di Bartolo G., Trong S., Kellar K., Schmutz J., Larimer F., Land M., Ivanova N., Richardson P.
Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

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Cross-references

Sequence databases

CP000089 Genomic DNA. Translation: AAZ48398.1.
RefSeqYP_286868.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID3566781.
GenomeReviewsGene locus Daro_3669 in contig CP000089_GR.
KEGGdar:Daro_3669.
NMPDRfig|159087.4.peg.3191.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ479T3.
OMAQ479T3. VKAYLLD.

Enzyme and pathway databases

BioCycDARO159087:DARO_3669-MON.

Family and domain databases

HAMAPMF_00333.
[Tree]
InterProIPR001260. Coprogen_oxidas.
IPR018375. Coproporphyrinogen-3_ox_CS.
[Graphical view]
Gene3DG3DSA:3.40.1500.10. Coprogen_oxidas. 1 hit.
PANTHERPTHR10755. Coprogen_oxidas. 1 hit.
PfamPF01218. Coprogen_oxidas. 1 hit.
[Graphical view]
PIRSFPIRSF000166. Coproporphyri_ox. 1 hit.
PRINTSPR00073. COPRGNOXDASE.
PROSITEPS01021. COPROGEN_OXIDASE. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameHEM6_DECAR
AccessionPrimary (citable) accession number: Q479T3
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: September 13, 2005
Last modified: June 16, 2009
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

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Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents