Q479B1 (DADA_DECAR) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
D-amino acid dehydrogenase small subunit
EC=1.4.99.1

Gene names

Name:	dadA
Ordered Locus Names:	Daro_3842

Organism

Dechloromonas aromatica (strain RCB) [Complete proteome] [HAMAP]

Taxonomic identifier

159087 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Rhodocyclales › Rhodocyclaceae › Dechloromonas

Protein attributes

Sequence length	418 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202
Catalytic activity	A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202
Cofactor	FAD By similarity. HAMAP MF_01202
Pathway	Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1. HAMAP MF_01202
Subunit structure	Heterodimer of a small and a large subunit By similarity.
Sequence similarities	Belongs to the DadA oxidoreductase family.

Ontologies

Keywords
Ligand	FAD Flavoprotein
Molecular function	Oxidoreductase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 418	418	D-amino acid dehydrogenase small subunit HAMAP MF_01202		PRO_1000066089
Regions
	Nucleotide binding	3 – 17	15	FAD Potential

Sequences

	Sequence		Length	Mass (Da)
	Q479B1 [UniParc]. Last modified September 13, 2005. Version 1. Checksum: 03A283AF0EA0CD3B	FASTA	418	45,831
	10 20 30 40 50 60 MRVLVLGAGV VGTTSAWYLA RAGHQVTVVD RQPVAGNETS FANGGQISVS HAEPWANPHV 70 80 90 100 110 120 LPRVLKWLGR EDAPLLWRWR ADPAQLAWGL RFLGECFPGR VRRNIAAIVS MALYSRGRLQ 130 140 150 160 170 180 ALREELGLQY DHLERGILHI YTDRDEFSAA LDAARVMRQF GLDRDTVDVD KCLEIEPALS 190 200 210 220 230 240 GARHLLVGGD YTRSDESGDA NKFTCALAEH AKAAGVDFRY GLTVERIATS GSEIVGVLVQ 250 260 270 280 290 300 HSEGGPERLT ADAYVVALGS YSPLLLRPIG VGLPVYPAKG YSATLTLAEA SLAPTVSLTD 310 320 330 340 350 360 DERKLVFSRL GNRLRIAGTA EFNGYNLELN PVRCQALIDR TRQLFPRLEI VGEPTLWCGL 370 380 390 400 410 RPATPSNVPY IGQTRYRNLW LNTGHGTLGW TMACGSAASL AEMISGRRPE PEFPFLRC

References

[1]

"Complete sequence of Dechloromonas aromatica RCB." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Di Bartolo G., Trong S., Kellar K., Schmutz J., Larimer F., Land M., Ivanova N., Richardson P. Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RCB.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000089 Genomic DNA. Translation: AAZ48570.1.
RefSeq	YP_287040.1. NC_007298.1.
3D structure databases
ProteinModelPortal	Q479B1.
ModBase	Search...
Protein-protein interaction databases
STRING	Q479B1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3568013.
GenomeReviews	Gene locus Daro_3842 in contig CP000089_GR.
KEGG	dar:Daro_3842.
NMPDR	fig|159087.4.peg.2586.
PATRIC	21606378. VBIDecAro89105_3829.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0665.
HOGENOM	HBG729204.
OMA	WANPGAP.
PhylomeDB	Q479B1.
ProtClustDB	CLSK2526121.
Enzyme and pathway databases
BioCyc	DARO159087:DARO_3842-MONOMER.
Family and domain databases
HAMAP	MF_01202. DadA. [Tree]
InterPro	IPR023080. D-aa_DH_ssu_DadA. IPR006076. FAD-dep_OxRdtase. [Graphical view]
KO	K00285.
Pfam	PF01266. DAO. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

DADA_DECAR

Accession

Primary (citable) accession number: Q479B1

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 5, 2008
Last sequence update:	September 13, 2005
Last modified:	January 25, 2012
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program