Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putative uncharacterized protein YkfC

Gene

ykfC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein uncertaini

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6133-MONOMER.
ECOL316407:JW5813-MONOMER.
RETL1328306-WGS:GSTH-5459-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein YkfC
Gene namesi
Name:ykfC
Ordered Locus Names:b0258, JW5813
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13341. ykfC.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 376376Putative uncharacterized protein YkfCPRO_0000168548Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi4262795. 116 interactions.

Structurei

3D structure databases

ProteinModelPortaliQ47688.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini67 – 332266Reverse transcriptasePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 reverse transcriptase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105EKQ. Bacteria.
COG3344. LUCA.
HOGENOMiHOG000000651.
InParanoidiQ47688.
OMAiIPHVNDG.
PhylomeDBiQ47688.

Family and domain databases

InterProiIPR000477. RT_dom.
[Graphical view]
PfamiPF00078. RVT_1. 1 hit.
[Graphical view]
PROSITEiPS50878. RT_POL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q47688-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQRKLATWAA TDPSLRIQRL LRLITQPEWL AEAARITLSS KGAHTPGVDG
60 70 80 90 100
VNKTMLQARL AVELQILRDE LLSGHYQPLP ARRVYIPKSN GKLRPLGIPA
110 120 130 140 150
LRDRIVQRAM LMAMEPIWES DFHTLSYGFR PERSVHHAIR TVKLQLTDCG
160 170 180 190 200
ETRGRWVIEG DLSSYFDTVH HRLLMKAVRR RISDARFMTL LWKTIKAGHI
210 220 230 240 250
DVGLFRAASE GVPQGGVISP LLSNIMLNEF DQYLHERYLS GKARKDRWYW
260 270 280 290 300
NNSIQRGRST AVRENWQWKP AVAYCRYADD FVLIVKGTKA QVEAIREECR
310 320 330 340 350
GVLEGSLKLR LNMDKTKIPH VNDGFIFLGH RLIRKRSRYG EMRVVSTIPQ
360 370
EKARNFAASL TALLWKVRIS GEILLG
Length:376
Mass (Da):43,165
Last modified:November 1, 1997 - v2
Checksum:i1F16921EC6B91083
GO

Sequence cautioni

The sequence BAA77927 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70214 Genomic DNA. Translation: AAB08678.1.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA77927.2. Different initiation.
PIRiB64751.

Genome annotation databases

EnsemblBacteriaiBAA77927; BAA77927; BAA77927.
KEGGiecj:JW5813.
PATRICi48659714. VBIEscCol107702_0253.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70214 Genomic DNA. Translation: AAB08678.1.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA77927.2. Different initiation.
PIRiB64751.

3D structure databases

ProteinModelPortaliQ47688.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262795. 116 interactions.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA77927; BAA77927; BAA77927.
KEGGiecj:JW5813.
PATRICi48659714. VBIEscCol107702_0253.

Organism-specific databases

EchoBASEiEB3125.
EcoGeneiEG13341. ykfC.

Phylogenomic databases

eggNOGiENOG4105EKQ. Bacteria.
COG3344. LUCA.
HOGENOMiHOG000000651.
InParanoidiQ47688.
OMAiIPHVNDG.
PhylomeDBiQ47688.

Enzyme and pathway databases

BioCyciEcoCyc:G6133-MONOMER.
ECOL316407:JW5813-MONOMER.
RETL1328306-WGS:GSTH-5459-MONOMER.

Family and domain databases

InterProiIPR000477. RT_dom.
[Graphical view]
PfamiPF00078. RVT_1. 1 hit.
[Graphical view]
PROSITEiPS50878. RT_POL. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYKFC_ECOLI
AccessioniPrimary (citable) accession number: Q47688
Secondary accession number(s): P77710
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: April 13, 2016
This is version 103 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.