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Protein
Submitted name:

Pectate lyase

Gene

pel-1

Organism
Pectobacterium carotovorum (Erwinia carotovora)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradationUniRule annotation

Protein family/group databases

CAZyiPL1. Polysaccharide Lyase Family 1.

Names & Taxonomyi

Protein namesi
Submitted name:
Pectate lyaseImported
Gene namesi
Name:pel-1Imported
OrganismiPectobacterium carotovorum (Erwinia carotovora)Imported
Taxonomic identifieri554 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium

Subcellular locationi

  • Secreted UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

SecretedUniRule annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 374352Sequence analysisPRO_5004233091Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ47467.
SMRiQ47467. Positions 22-373.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini49 – 284236Amb_allInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTiSM00656. Amb_all. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

Q47467-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYLLPTAAA GLLLLAAQPA MAANTGGYAT TDGGEVSGAV KKTARSMKEI
60 70 80 90 100
VDILKPRKWI QKARKSKAVP YPLIITYSGN EDSLIKAAEK NICGQWSKDA
110 120 130 140 150
RGVQIKEFTK GITIQGTNGS SANFGVWIVN SSNVVVRNMR FGYMPGGAQD
160 170 180 190 200
GDAIRIDNSP NVWIDHNEIF AKNFECKGTP DNDTTFESAV DIKKGSTNVT
210 220 230 240 250
VSYNYIHGIK KVGLSGATNT DTGRNLTYHH NIYSDVNSRL PLQRGGLVHA
260 270 280 290 300
YNNLYDGITG SGFNVRQKGI ALIESNWFEN ALNPVTARND SSNFGTWELR
310 320 330 340 350
NNNITKPADF SKYKITWGKP SSPHINADDW KSTGKFPAVS YKYTPVSAQC
360 370
VKDKLANYAG VGKNLAVLTA ANCK
Length:374
Mass (Da):40,686
Last modified:November 1, 1996 - v1
Checksum:i99D1843197E09156
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L32171 Genomic DNA. Translation: AAA73933.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L32171 Genomic DNA. Translation: AAA73933.1.

3D structure databases

ProteinModelPortaliQ47467.
SMRiQ47467. Positions 22-373.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiPL1. Polysaccharide Lyase Family 1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTiSM00656. Amb_all. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ47467_PECCA
AccessioniPrimary (citable) accession number: Q47467
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.