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Protein

Protein NinE homolog from lambdoid prophage DLP12

Gene

ninE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6304-MONOMER.
ECOL316407:JW0536-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein NinE homolog from lambdoid prophage DLP12
Gene namesi
Name:ninE
Ordered Locus Names:b0548, JW0536
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14286. ninE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 5656Protein NinE homolog from lambdoid prophage DLP12PRO_0000077621Add
BLAST

Proteomic databases

PaxDbiQ47270.
PRIDEiQ47270.

Interactioni

Protein-protein interaction databases

BioGridi4259877. 141 interactions.
IntActiQ47270. 3 interactions.
STRINGi511145.b0548.

Structurei

3D structure databases

ProteinModelPortaliQ47270.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ninE family.Curated

Phylogenomic databases

eggNOGiENOG410757E. Bacteria.
ENOG410ZDTG. LUCA.
HOGENOMiHOG000054897.
OMAiVDQKWLR.
OrthoDBiEOG6F81W0.

Sequencei

Sequence statusi: Complete.

Q47270-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATPLIRVMN GHIYRVPNRR KRKPELKPSE IPTLLGYTAS LVDKKWLRLA

ARRSHG
Length:56
Mass (Da):6,494
Last modified:November 1, 1996 - v1
Checksum:iBBF374F7ADC3CEFB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92587 Genomic DNA. Translation: CAA63319.1.
U00096 Genomic DNA. Translation: AAC73649.1.
AP009048 Genomic DNA. Translation: BAE76323.1.
PIRiS66588.
RefSeqiNP_415080.1. NC_000913.3.
WP_000224915.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73649; AAC73649; b0548.
BAE76323; BAE76323; BAE76323.
GeneIDi945151.
KEGGiecj:JW0536.
eco:b0548.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92587 Genomic DNA. Translation: CAA63319.1.
U00096 Genomic DNA. Translation: AAC73649.1.
AP009048 Genomic DNA. Translation: BAE76323.1.
PIRiS66588.
RefSeqiNP_415080.1. NC_000913.3.
WP_000224915.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliQ47270.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259877. 141 interactions.
IntActiQ47270. 3 interactions.
STRINGi511145.b0548.

Proteomic databases

PaxDbiQ47270.
PRIDEiQ47270.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73649; AAC73649; b0548.
BAE76323; BAE76323; BAE76323.
GeneIDi945151.
KEGGiecj:JW0536.
eco:b0548.

Organism-specific databases

EchoBASEiEB4034.
EcoGeneiEG14286. ninE.

Phylogenomic databases

eggNOGiENOG410757E. Bacteria.
ENOG410ZDTG. LUCA.
HOGENOMiHOG000054897.
OMAiVDQKWLR.
OrthoDBiEOG6F81W0.

Enzyme and pathway databases

BioCyciEcoCyc:G6304-MONOMER.
ECOL316407:JW0536-MONOMER.

Miscellaneous databases

PROiQ47270.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82."
    Mahdi A.A., Sharples G.J., Mandal T.N., Lloyd R.G.
    J. Mol. Biol. 257:561-573(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiNINE_ECOLI
AccessioniPrimary (citable) accession number: Q47270
Secondary accession number(s): Q2MBN3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: April 13, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.