Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized protein YbcN

Gene

ybcN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  • bubble DNA binding Source: EcoCyc
  • single-stranded DNA binding Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6303-MONOMER.
ECOL316407:JW0535-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbcN
Gene namesi
Name:ybcN
Ordered Locus Names:b0547, JW0535
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13630. ybcN.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001686521 – 151Uncharacterized protein YbcNAdd BLAST151

Proteomic databases

PaxDbiQ47269.
PRIDEiQ47269.

Interactioni

Protein-protein interaction databases

BioGridi4259876. 281 interactors.
IntActiQ47269. 7 interactors.
STRINGi511145.b0547.

Structurei

3D structure databases

ProteinModelPortaliQ47269.
SMRiQ47269.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To equivalent protein in phage 82.Curated

Phylogenomic databases

eggNOGiENOG4108V2F. Bacteria.
ENOG4111N1P. LUCA.
HOGENOMiHOG000267847.
OMAiGEMYIFL.

Family and domain databases

Gene3Di1.10.3790.10. 1 hit.
InterProiIPR008711. Recombinase_NinB.
[Graphical view]
SUPFAMiSSF103370. SSF103370. 1 hit.

Sequencei

Sequence statusi: Complete.

Q47269-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNLSQDGIKL HRGNFTAIGR QIQPYLEEGK CFRMVLKPWR EKRSLSQNAL
60 70 80 90 100
SHMWYSEISE YLISRGKTFA TPAWVKDALK HTYLGYETKD LVDVVTGDIT
110 120 130 140 150
TIQSLRHTSD LDTGEMYVFL CKVEAWAMNI GCHLTIPQSC EFQLLRDKQE

A
Length:151
Mass (Da):17,433
Last modified:November 1, 1996 - v1
Checksum:iA09FFFBBE24D91B7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92587 Genomic DNA. Translation: CAA63318.1.
U82598 Genomic DNA. Translation: AAB40744.1.
U00096 Genomic DNA. Translation: AAC73648.1.
AP009048 Genomic DNA. Translation: BAE76322.1.
PIRiS66587.
RefSeqiNP_415079.1. NC_000913.3.
WP_001054340.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73648; AAC73648; b0547.
BAE76322; BAE76322; BAE76322.
GeneIDi945162.
KEGGiecj:JW0535.
eco:b0547.
PATRICi32116258. VBIEscCol129921_0569.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92587 Genomic DNA. Translation: CAA63318.1.
U82598 Genomic DNA. Translation: AAB40744.1.
U00096 Genomic DNA. Translation: AAC73648.1.
AP009048 Genomic DNA. Translation: BAE76322.1.
PIRiS66587.
RefSeqiNP_415079.1. NC_000913.3.
WP_001054340.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliQ47269.
SMRiQ47269.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259876. 281 interactors.
IntActiQ47269. 7 interactors.
STRINGi511145.b0547.

Proteomic databases

PaxDbiQ47269.
PRIDEiQ47269.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73648; AAC73648; b0547.
BAE76322; BAE76322; BAE76322.
GeneIDi945162.
KEGGiecj:JW0535.
eco:b0547.
PATRICi32116258. VBIEscCol129921_0569.

Organism-specific databases

EchoBASEiEB3395.
EcoGeneiEG13630. ybcN.

Phylogenomic databases

eggNOGiENOG4108V2F. Bacteria.
ENOG4111N1P. LUCA.
HOGENOMiHOG000267847.
OMAiGEMYIFL.

Enzyme and pathway databases

BioCyciEcoCyc:G6303-MONOMER.
ECOL316407:JW0535-MONOMER.

Miscellaneous databases

PROiQ47269.

Family and domain databases

Gene3Di1.10.3790.10. 1 hit.
InterProiIPR008711. Recombinase_NinB.
[Graphical view]
SUPFAMiSSF103370. SSF103370. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYBCN_ECOLI
AccessioniPrimary (citable) accession number: Q47269
Secondary accession number(s): Q2MBN4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.