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Q47152 (YAFM_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 84. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Uncharacterized protein YafM
Gene names
Name:yafM
Ordered Locus Names:b0228, JW0218
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia ›

Protein attributes

Sequence length165 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

To H.influenzae HI_0217.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 165165Uncharacterized protein YafM
PRO_0000168536

Secondary structure

1 ...................... 165
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q47152 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 970463B76841B864

FASTA16520,042
        10         20         30         40         50         60 
MSEYRRYYIK GGTWFFTVNL RNRRSQLLTT QYQMLRHAII KVKRDRPFEI NAWVVLPEHM 

        70         80         90        100        110        120 
HCIWTLPEGD DDFSSRWREI KKQFTHACGL KNIWQPRFWE HAIRNTKDYR HHVDYIYINP 

       130        140        150        160 
VKHGWVKQVS DWPFSTFHRD VARGLYPIDW AGDVTDFSAG ERIIS

« Hide

References

« Hide 'large scale' references
[1]"dinP, a new gene in Escherichia coli, whose product shows similarities to UmuC and its homologues."
Ohmori H., Hatada E., Qiao Y., Tsuji M., Fukuda R.
Mutat. Res. 347:1-7(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[2]"Systematic sequencing of the Escherichia coli genome: analysis of the 4.0 - 6.0 min (189,987 - 281,416bp) region."
Takemoto K., Mori H., Murayama N., Kataoka K., Yano M., Itoh T., Yamamoto Y., Inokuchi H., Miki T., Hatada E., Fukuda R., Ichihara S., Mizuno T., Makino K., Nakata A., Yura T., Sampei G., Mizobuchi K.
Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[3]"Sequence of minutes 4-25 of Escherichia coli."
Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[4]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1474(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[5]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		D38582 Genomic DNA. Translation: BAA07590.1.
U70214 Genomic DNA. Translation: AAB08648.1.
U00096 Genomic DNA. Translation: AAC73332.1.
AP009048 Genomic DNA. Translation: BAA77898.1.
PIRE64747.
RefSeqNP_414763.1. NC_000913.2.
YP_488525.1. NC_007779.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4ER8X-ray2.60A1-165[»]
ProteinModelPortalQ47152.
SMRQ47152. Positions 1-165.
ModBaseSearch...

Protein-protein interaction databases

DIPDIP-11217N.
IntActQ47152. 1 interaction.
STRING511145.b0228.

Proteomic databases

PaxDbQ47152.
PRIDEQ47152.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC73332; AAC73332; b0228.
BAA77898; BAA77898; BAA77898.
GeneID12930779.
944913.
KEGGecj:Y75_p0219.
eco:b0228.
PATRIC32115571. VBIEscCol129921_0230.

Organism-specific databases

EchoBASEEB2944.
EcoGeneEG13150. yafM.

Phylogenomic databases

eggNOGCOG1943.
HOGENOMHOG000117045.
KOK07491.
OMADWPYSTF.
ProtClustDBCLSK891703.

Enzyme and pathway databases

BioCycEcoCyc:G6112-MONOMER.
ECOL316407:JW0218-MONOMER.

Gene expression databases

GenevestigatorQ47152.

Family and domain databases

Gene3D3.30.70.1290. 1 hit.
InterProIPR002686. Transposase_17.
[Graphical view]
SUPFAMSSF143422. SSF143422. 1 hit.
ProtoNetSearch...

Entry information

Entry nameYAFM_ECOLI
AccessionPrimary (citable) accession number: Q47152
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 1, 2013
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents