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Q46R07

- Q46R07_CUPPJ

UniProt

Q46R07 - Q46R07_CUPPJ

Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Reut_B5079

Organism
Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia eutropha (strain JMP 134))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (13 Sep 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciCPIN264198:GIW3-5156-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
    Gene namesi
    Ordered Locus Names:Reut_B5079Imported
    OrganismiCupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia eutropha (strain JMP 134))Imported
    Taxonomic identifieri264198 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeCupriavidus
    ProteomesiUP000002697: Chromosome 2

    Interactioni

    Protein-protein interaction databases

    STRINGi264198.Reut_B5079.

    Structurei

    3D structure databases

    ProteinModelPortaliQ46R07.
    SMRiQ46R07. Positions 605-890.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q46R07-1 [UniParc]FASTAAdd to Basket

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    MAKTTRQTPD DTRGTRSTRT AEPARKRPAD ALGKYRQMRD FAATPEPGGT    50
    RQRARATPKA KRAGTLSFVI QKHAARRLHY DFRLELDGTL KSWAVPKGPS 100
    LDPADKRMAV HVEDHPLDYA GFEGVIPPGH YGAGTVIVWD RGIWVPDGDA 150
    DAAYRAGKLK FELRGEKLHG HWTLVRMHGS RQKEQDAWLL IKERDDAAVP 200
    ASEFDVTEAL PDSVLAGTSA ARKTTGRRAA TNATKPGNGA KDSTKDSART 250
    KPLPLPRRAT AAALPLALSP QLATLVERAP PDADAWRYEI KFDGYRMLAR 300
    IDGDDVRLFT RQGHDWTSRL KTLAREVRAL GLPDGWLDGE IVVLGKHGET 350
    DFQALQNAFE TSHVESIQYF VFDLPFYAGH DLRKAPLSER RALLRRLFEN 400
    NTGTRLRFSE EFEAAPDEML DAACRMKLEG VIGKRIDAPY VSTRSNTWIK 450
    LKCTQRQEFV IGGFTEPKGS RQGLGSLLLG VHDSAGRLRY AGNVGTGFDT 500
    RSLASLREQL DAQRTDKAPF HELPSSIKGL WVRPRLVAEV SFGSWTREGR 550
    VRHAVFHGLR SDKPASAVSV EKPAAPAGRK TAATTAARSA PATTRKGKPT 600
    AANGKVAISH SERVIDTASG LTKGDLVRYY ESAAPLMLPH LRGRPIAMVR 650
    APAGVAGQQF FQRHGDTLKI DGVNVLDPDL WPGHPALLEI VSEHALVAAA 700
    QLNVVEFHTW NANKRSMDRP NRIIFDLDPG EGVPWPHMRE AAALMKAWLD 750
    ELGLASFLKT SGGKGLHVVV PLTPRAGWDE VKEFAHGVVL HMAVTIPQRF 800
    VAKSGAGNRI GKIFIDYLRN GVGATTAAAF SARARPGLGV SVPLAWDELD 850
    GLEASDQWTV ANVAPRLDEL ARHDPWDTYA DTRQTITRAA TRLARAGRSK 900
    P 901
    Length:901
    Mass (Da):98,871
    Last modified:September 13, 2005 - v1
    Checksum:i250BDFD8F1B2E563
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000091 Genomic DNA. Translation: AAZ64427.1.
    RefSeqiYP_299271.1. NC_007348.1.

    Genome annotation databases

    EnsemblBacteriaiAAZ64427; AAZ64427; Reut_B5079.
    GeneIDi3613364.
    KEGGireu:Reut_B5079.
    PATRICi20236083. VBIRalEut24049_5843.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000091 Genomic DNA. Translation: AAZ64427.1 .
    RefSeqi YP_299271.1. NC_007348.1.

    3D structure databases

    ProteinModelPortali Q46R07.
    SMRi Q46R07. Positions 605-890.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 264198.Reut_B5079.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAZ64427 ; AAZ64427 ; Reut_B5079 .
    GeneIDi 3613364.
    KEGGi reu:Reut_B5079.
    PATRICi 20236083. VBIRalEut24049_5843.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci CPIN264198:GIW3-5156-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 2 of Ralstonia eutropha JMP134."
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Goltsman E., Martinez M., Schmutz J., Larimer F., Land M., Lykidis A., Richardson P.
      Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JMP134 / LMG 1197Imported.

    Entry informationi

    Entry nameiQ46R07_CUPPJ
    AccessioniPrimary (citable) accession number: Q46R07
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 13, 2005
    Last sequence update: September 13, 2005
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3