Q46R07 (Q46R07_CUPPJ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module EMBL AAZ64427.1

Gene names

Ordered Locus Names:

Reut_B5079 EMBL AAZ64427.1

Organism

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) [Complete proteome] [HAMAP] EMBL AAZ64427.1

Taxonomic identifier

264198 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Cupriavidus › Cupriavidus pinatubonensis

Protein attributes

Sequence length	901 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AAZ64427.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q46R07 [UniParc]. Last modified September 13, 2005. Version 1. Checksum: 250BDFD8F1B2E563	FASTA	901	98,871
	10 20 30 40 50 60 MAKTTRQTPD DTRGTRSTRT AEPARKRPAD ALGKYRQMRD FAATPEPGGT RQRARATPKA 70 80 90 100 110 120 KRAGTLSFVI QKHAARRLHY DFRLELDGTL KSWAVPKGPS LDPADKRMAV HVEDHPLDYA 130 140 150 160 170 180 GFEGVIPPGH YGAGTVIVWD RGIWVPDGDA DAAYRAGKLK FELRGEKLHG HWTLVRMHGS 190 200 210 220 230 240 RQKEQDAWLL IKERDDAAVP ASEFDVTEAL PDSVLAGTSA ARKTTGRRAA TNATKPGNGA 250 260 270 280 290 300 KDSTKDSART KPLPLPRRAT AAALPLALSP QLATLVERAP PDADAWRYEI KFDGYRMLAR 310 320 330 340 350 360 IDGDDVRLFT RQGHDWTSRL KTLAREVRAL GLPDGWLDGE IVVLGKHGET DFQALQNAFE 370 380 390 400 410 420 TSHVESIQYF VFDLPFYAGH DLRKAPLSER RALLRRLFEN NTGTRLRFSE EFEAAPDEML 430 440 450 460 470 480 DAACRMKLEG VIGKRIDAPY VSTRSNTWIK LKCTQRQEFV IGGFTEPKGS RQGLGSLLLG 490 500 510 520 530 540 VHDSAGRLRY AGNVGTGFDT RSLASLREQL DAQRTDKAPF HELPSSIKGL WVRPRLVAEV 550 560 570 580 590 600 SFGSWTREGR VRHAVFHGLR SDKPASAVSV EKPAAPAGRK TAATTAARSA PATTRKGKPT 610 620 630 640 650 660 AANGKVAISH SERVIDTASG LTKGDLVRYY ESAAPLMLPH LRGRPIAMVR APAGVAGQQF 670 680 690 700 710 720 FQRHGDTLKI DGVNVLDPDL WPGHPALLEI VSEHALVAAA QLNVVEFHTW NANKRSMDRP 730 740 750 760 770 780 NRIIFDLDPG EGVPWPHMRE AAALMKAWLD ELGLASFLKT SGGKGLHVVV PLTPRAGWDE 790 800 810 820 830 840 VKEFAHGVVL HMAVTIPQRF VAKSGAGNRI GKIFIDYLRN GVGATTAAAF SARARPGLGV 850 860 870 880 890 900 SVPLAWDELD GLEASDQWTV ANVAPRLDEL ARHDPWDTYA DTRQTITRAA TRLARAGRSK P

References

[1]

"Complete sequence of chromosome 2 of Ralstonia eutropha JMP134." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Goltsman E., Martinez M., Schmutz J., Larimer F., Land M., Lykidis A., Richardson P. Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JMP134 / LMG 1197.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000091 Genomic DNA. Translation: AAZ64427.1.
RefSeq	YP_299271.1. NC_007348.1.
3D structure databases
ProteinModelPortal	Q46R07.
SMR	Q46R07. Positions 605-890.
ModBase	Search...
Protein-protein interaction databases
STRING	264198.Reut_B5079.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAZ64427; AAZ64427; Reut_B5079.
GeneID	3613364.
KEGG	reu:Reut_B5079.
PATRIC	20236083. VBIRalEut24049_5843.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	CPIN264198:GIW3-5156-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q46R07_CUPPJ

Accession

Primary (citable) accession number: Q46R07

Entry history

Integrated into UniProtKB/TrEMBL:	September 13, 2005
Last sequence update:	September 13, 2005
Last modified:	May 1, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)