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Protein

UPF0292 protein Mbar_A0484

Gene

Mbar_A0484

Organism
Methanosarcina barkeri (strain Fusaro / DSM 804)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Mg2+UniRule annotationNote: Binds two Mg2+ per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi34 – 341Magnesium 1; catalyticUniRule annotation
Metal bindingi78 – 781Magnesium 1; catalyticUniRule annotation
Metal bindingi78 – 781Magnesium 2UniRule annotation
Metal bindingi80 – 801Magnesium 2UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Magnesium, Metal-binding

Enzyme and pathway databases

BioCyciMBAR269797:GHUW-495-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0292 protein Mbar_A0484UniRule annotation
Gene namesi
Ordered Locus Names:Mbar_A0484
OrganismiMethanosarcina barkeri (strain Fusaro / DSM 804)
Taxonomic identifieri269797 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanosarcina
Proteomesi
  • UP000008156 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 143143UPF0292 protein Mbar_A0484PRO_1000064938Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi269797.Mbar_A0484.

Structurei

3D structure databases

ProteinModelPortaliQ46F76.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini28 – 10982ToprimUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the UPF0292 family.UniRule annotation
Contains 1 Toprim domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01486. Archaea.
COG1658. LUCA.
HOGENOMiHOG000230374.
OMAiMYAENYK.

Family and domain databases

HAMAPiMF_01095. UPF0292.
InterProiIPR006171. Toprim_domain.
IPR022972. UPF0292.
[Graphical view]
PfamiPF13662. Toprim_4. 1 hit.
[Graphical view]
SMARTiSM00493. TOPRIM. 1 hit.
[Graphical view]
PROSITEiPS50880. TOPRIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q46F76-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDLEIYRKR LERIEELLSE LSEYSGRGAI IIVEGKRDVL SLKRLGIEGN
60 70 80 90 100
FELATHQSLF NFSEKIARLG NEVVILTDWD RRGDILAIKL SGYFQSFGLK
110 120 130 140
PELEIRNKLR LISQKEIKDV ESLYTYVSKL RLKTGYCSKR DFQ
Length:143
Mass (Da):16,662
Last modified:September 13, 2005 - v1
Checksum:i583F6AD85449B54F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000099 Genomic DNA. Translation: AAZ69466.1.
RefSeqiWP_011305518.1. NC_007355.1.

Genome annotation databases

EnsemblBacteriaiAAZ69466; AAZ69466; Mbar_A0484.
GeneIDi3624226.
KEGGimba:Mbar_A0484.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000099 Genomic DNA. Translation: AAZ69466.1.
RefSeqiWP_011305518.1. NC_007355.1.

3D structure databases

ProteinModelPortaliQ46F76.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269797.Mbar_A0484.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ69466; AAZ69466; Mbar_A0484.
GeneIDi3624226.
KEGGimba:Mbar_A0484.

Phylogenomic databases

eggNOGiarCOG01486. Archaea.
COG1658. LUCA.
HOGENOMiHOG000230374.
OMAiMYAENYK.

Enzyme and pathway databases

BioCyciMBAR269797:GHUW-495-MONOMER.

Family and domain databases

HAMAPiMF_01095. UPF0292.
InterProiIPR006171. Toprim_domain.
IPR022972. UPF0292.
[Graphical view]
PfamiPF13662. Toprim_4. 1 hit.
[Graphical view]
SMARTiSM00493. TOPRIM. 1 hit.
[Graphical view]
PROSITEiPS50880. TOPRIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes."
    Maeder D.L., Anderson I., Brettin T.S., Bruce D.C., Gilna P., Han C.S., Lapidus A., Metcalf W.W., Saunders E., Tapia R., Sowers K.R.
    J. Bacteriol. 188:7922-7931(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Fusaro / DSM 804.

Entry informationi

Entry nameiY484_METBF
AccessioniPrimary (citable) accession number: Q46F76
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: September 13, 2005
Last modified: December 9, 2015
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.