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Protein

Ribonuclease P protein component 3

Gene

rnp3

Organism
Methanosarcina barkeri (strain Fusaro / DSM 804)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.UniRule annotation

Catalytic activityi

Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Biological processi

tRNA processing

Enzyme and pathway databases

BioCyciMBAR269797:GHUW-2550-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease P protein component 3UniRule annotation (EC:3.1.26.5UniRule annotation)
Short name:
RNase P component 3UniRule annotation
Alternative name(s):
Rpp30UniRule annotation
Gene namesi
Name:rnp3UniRule annotation
Ordered Locus Names:Mbar_A2501
OrganismiMethanosarcina barkeri (strain Fusaro / DSM 804)
Taxonomic identifieri269797 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanosarcina
ProteomesiUP000008156 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 239239Ribonuclease P protein component 3PRO_1000046625Add
BLAST

Interactioni

Subunit structurei

Consists of a catalytic RNA component and at least 4-5 protein subunits.UniRule annotation

Protein-protein interaction databases

STRINGi269797.Mbar_A2501.

Structurei

3D structure databases

ProteinModelPortaliQ469M8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the eukaryotic/archaeal RNase P protein component 3 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1603.
HOGENOMiHOG000229552.
KOiK03539.
OMAiSSRQMKF.

Family and domain databases

HAMAPiMF_00756. RNase_P_3.
InterProiIPR016195. Pol/histidinol_Pase-like.
IPR023539. RNase_P_comp-3_arc.
IPR002738. RNase_P_p30.
[Graphical view]
PANTHERiPTHR13031. PTHR13031. 1 hit.
PfamiPF01876. RNase_P_p30. 1 hit.
[Graphical view]
SUPFAMiSSF89550. SSF89550. 1 hit.

Sequencei

Sequence statusi: Complete.

Q469M8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKPKFYDFC VHAVPDGENT VDQLSALARH LGYSGIALTN HSDKLPQSQP
60 70 80 90 100
VLPSTNEFEV FKGIELVEEN PSKLHGLIGK FRKSVDVLIV HGGSENVNRA
110 120 130 140 150
ALENPRVDIL NHPAFAKSSG LNQVLAKSAA ENDVAISLII RPLLHSRGPR
160 170 180 190 200
RVRLLSNLRA NLDLARKYDV SLVLSSGAMS CFDLRSPMET LALAEVCGLE
210 220 230
EDEALEAITV VPERIISRNR PGPGHVREGI EVLEEGDYS
Length:239
Mass (Da):26,090
Last modified:September 13, 2005 - v1
Checksum:iC77F34E1D35ECE48
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000099 Genomic DNA. Translation: AAZ71414.1.
RefSeqiWP_011307459.1. NC_007355.1.
YP_305994.1. NC_007355.1.

Genome annotation databases

EnsemblBacteriaiAAZ71414; AAZ71414; Mbar_A2501.
GeneIDi3625694.
KEGGimba:Mbar_A2501.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000099 Genomic DNA. Translation: AAZ71414.1.
RefSeqiWP_011307459.1. NC_007355.1.
YP_305994.1. NC_007355.1.

3D structure databases

ProteinModelPortaliQ469M8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269797.Mbar_A2501.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ71414; AAZ71414; Mbar_A2501.
GeneIDi3625694.
KEGGimba:Mbar_A2501.

Phylogenomic databases

eggNOGiCOG1603.
HOGENOMiHOG000229552.
KOiK03539.
OMAiSSRQMKF.

Enzyme and pathway databases

BioCyciMBAR269797:GHUW-2550-MONOMER.

Family and domain databases

HAMAPiMF_00756. RNase_P_3.
InterProiIPR016195. Pol/histidinol_Pase-like.
IPR023539. RNase_P_comp-3_arc.
IPR002738. RNase_P_p30.
[Graphical view]
PANTHERiPTHR13031. PTHR13031. 1 hit.
PfamiPF01876. RNase_P_p30. 1 hit.
[Graphical view]
SUPFAMiSSF89550. SSF89550. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes."
    Maeder D.L., Anderson I., Brettin T.S., Bruce D.C., Gilna P., Han C.S., Lapidus A., Metcalf W.W., Saunders E., Tapia R., Sowers K.R.
    J. Bacteriol. 188:7922-7931(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Fusaro / DSM 804.

Entry informationi

Entry nameiRNP3_METBF
AccessioniPrimary (citable) accession number: Q469M8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: September 13, 2005
Last modified: May 27, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.