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Protein
Submitted name:

ImiR

Gene

imiR

Organism
Enterobacter cloacae
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi22 – 41H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
ImiRImported
Submitted name:
LysR family transcriptional regulatorImported
Gene namesi
Name:imiRImported
ORF Names:AW879_08575Imported
OrganismiEnterobacter cloacaeImported
Taxonomic identifieri550 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEnterobacterEnterobacter cloacae complex
Proteomesi
  • UP000064481 Componenti: Chromosome

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 62HTH lysR-type DNA-bindingInterPro annotationAdd BLAST58

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.

Sequencei

Sequence statusi: Complete.

Q46990-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRARLPLNAL RAFEASARYL NFTKAGLELH VSQAAVSQQV RTLEQMLGVA
60 70 80 90 100
LFTRVPRGLQ LTDEGLHLLP SITEALQMMS SAMDKFHEGK IKEVLTIAVV
110 120 130 140 150
GTFAIGWLLP RITEFLNENP WIDIRILTHN NVVNLAAEGI DASIRFGSGG
160 170 180 190 200
WINTENILLF QAPHTVLCSP ETSKKLCIPS DLKKVCLLRS YRKDEWNNWF
210 220 230 240 250
KAAGIDSWTV NGPIFDSTRH MIDAVKLGDY AALVPYHMFQ KELNERSVAK
260 270 280 290
PFEIYATLGG YWLTLQKSRV NHNSEALNVF KEWIIEHSRE FVLKS
Length:295
Mass (Da):33,409
Last modified:November 1, 1996 - v1
Checksum:i9C871516E6340E0E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U50278 Genomic DNA. Translation: AAA93460.1.
KR057494 Genomic DNA. Translation: AKN35416.1.
CP014280 Genomic DNA. Translation: AMJ69947.1.
RefSeqiWP_048224141.1. NZ_CP014280.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U50278 Genomic DNA. Translation: AAA93460.1.
KR057494 Genomic DNA. Translation: AKN35416.1.
CP014280 Genomic DNA. Translation: AMJ69947.1.
RefSeqiWP_048224141.1. NZ_CP014280.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ46990_ENTCL
AccessioniPrimary (citable) accession number: Q46990
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 15, 2017
This is version 80 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.