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Protein

Uncharacterized FAD-linked oxidoreductase YgcU

Gene

ygcU

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

FAD, Flavoprotein

Enzyme and pathway databases

BioCyciEcoCyc:G7439-MONOMER.
ECOL316407:JW5442-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized FAD-linked oxidoreductase YgcU (EC:1.-.-.-)
Gene namesi
Name:ygcU
Synonyms:ygcT, ygcV
Ordered Locus Names:b4463, JW5442
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13128. ygcU.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 484484Uncharacterized FAD-linked oxidoreductase YgcUPRO_0000128183Add
BLAST

Proteomic databases

PaxDbiQ46911.
PRIDEiQ46911.

Interactioni

Protein-protein interaction databases

BioGridi4260744. 32 interactions.
DIPiDIP-12136N.
STRINGi511145.b4463.

Structurei

3D structure databases

ProteinModelPortaliQ46911.
SMRiQ46911. Positions 50-473.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini47 – 226180FAD-binding PCMH-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 FAD-binding PCMH-type domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4107R3A. Bacteria.
COG0277. LUCA.
HOGENOMiHOG000230996.
InParanoidiQ46911.
OMAiEIMKWNG.
PhylomeDBiQ46911.

Family and domain databases

Gene3Di3.30.43.10. 1 hit.
3.30.465.10. 1 hit.
InterProiIPR025650. Alkyl-DHAP_Synthase.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR016166. FAD-bd_2.
IPR016167. FAD-bd_2_sub1.
IPR016164. FAD-linked_Oxase-like_C.
IPR004113. FAD-linked_oxidase_C.
IPR006094. Oxid_FAD_bind_N.
[Graphical view]
PANTHERiPTHR11748:SF3. PTHR11748:SF3. 1 hit.
PfamiPF02913. FAD-oxidase_C. 1 hit.
PF01565. FAD_binding_4. 1 hit.
[Graphical view]
SUPFAMiSSF55103. SSF55103. 1 hit.
SSF56176. SSF56176. 1 hit.
PROSITEiPS51387. FAD_PCMH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q46911-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLSRAAIVD QLKEIVGADR VITDETVLKK NSIDRFRKFP DIHGIYTLPI
60 70 80 90 100
PAAVVKLGST EQVSRVLNFM NAHKINGVPR TGASATEGGL ETVVENSVVL
110 120 130 140 150
DGSAMNQIIN IDIENMQATA QCGVPLEVLE NALREKGYTT GHSPQSKPLA
160 170 180 190 200
QMGGLVATRS IGQFSTLYGA IEDMVVGLEA VLADGTVTRI KNVPRRAAGP
210 220 230 240 250
DIRHIIIGNE GALCYITEVT VKIFKFTPEN NLFYGYILED MKTGFNILRE
260 270 280 290 300
IMVEGYRPSI ARLYDAEDGT QHFTHFADGK CVLIFMAEGN PRIAKVTGEG
310 320 330 340 350
IAEIVARYPQ CQRVDSKLIE TWFNNLNWGP DKVAAERVQI LKTGNMGFTT
360 370 380 390 400
EVSGCWSCIH EIYESVINRI RTEFPHADDI TMLGGHSSHS YQNGTNMYFV
410 420 430 440 450
YDYNVVDCKP EEEIDKYHNP LNKIICEETI RLGGSMVHHH GIGKHRVHWS
460 470 480
KLEHGSAWAL LEGLKKQFDP NGIMNTGTIY PIEK
Length:484
Mass (Da):53,737
Last modified:October 11, 2004 - v4
Checksum:i6DC18635146103D1
GO

Sequence cautioni

The sequence AAA69282 differs from that shown. Reason: Frameshift at positions 90 and 208. Curated
The sequence AAA69283 differs from that shown. Reason: Frameshift at positions 90 and 208. Curated
The sequence AAA69284 differs from that shown. Reason: Frameshift at positions 90 and 208. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69284.1. Frameshift.
U29579 Genomic DNA. Translation: AAA69283.1. Frameshift.
U29579 Genomic DNA. Translation: AAA69282.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48151.1.
AP009048 Genomic DNA. Translation: BAE76849.1.
RefSeqiWP_000059307.1. NZ_LN832404.1.
YP_026183.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48151; AAT48151; b4463.
BAE76849; BAE76849; BAE76849.
GeneIDi2847709.
KEGGiecj:JW5442.
eco:b4463.
PATRICi32120956. VBIEscCol129921_2870.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69284.1. Frameshift.
U29579 Genomic DNA. Translation: AAA69283.1. Frameshift.
U29579 Genomic DNA. Translation: AAA69282.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48151.1.
AP009048 Genomic DNA. Translation: BAE76849.1.
RefSeqiWP_000059307.1. NZ_LN832404.1.
YP_026183.1. NC_000913.3.

3D structure databases

ProteinModelPortaliQ46911.
SMRiQ46911. Positions 50-473.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260744. 32 interactions.
DIPiDIP-12136N.
STRINGi511145.b4463.

Proteomic databases

PaxDbiQ46911.
PRIDEiQ46911.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48151; AAT48151; b4463.
BAE76849; BAE76849; BAE76849.
GeneIDi2847709.
KEGGiecj:JW5442.
eco:b4463.
PATRICi32120956. VBIEscCol129921_2870.

Organism-specific databases

EchoBASEiEB2929.
EcoGeneiEG13128. ygcU.

Phylogenomic databases

eggNOGiENOG4107R3A. Bacteria.
COG0277. LUCA.
HOGENOMiHOG000230996.
InParanoidiQ46911.
OMAiEIMKWNG.
PhylomeDBiQ46911.

Enzyme and pathway databases

BioCyciEcoCyc:G7439-MONOMER.
ECOL316407:JW5442-MONOMER.

Miscellaneous databases

PROiQ46911.

Family and domain databases

Gene3Di3.30.43.10. 1 hit.
3.30.465.10. 1 hit.
InterProiIPR025650. Alkyl-DHAP_Synthase.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR016166. FAD-bd_2.
IPR016167. FAD-bd_2_sub1.
IPR016164. FAD-linked_Oxase-like_C.
IPR004113. FAD-linked_oxidase_C.
IPR006094. Oxid_FAD_bind_N.
[Graphical view]
PANTHERiPTHR11748:SF3. PTHR11748:SF3. 1 hit.
PfamiPF02913. FAD-oxidase_C. 1 hit.
PF01565. FAD_binding_4. 1 hit.
[Graphical view]
SUPFAMiSSF55103. SSF55103. 1 hit.
SSF56176. SSF56176. 1 hit.
PROSITEiPS51387. FAD_PCMH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGCU_ECOLI
AccessioniPrimary (citable) accession number: Q46911
Secondary accession number(s): Q2MA57
, Q46910, Q46912, Q6BF63
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: October 11, 2004
Last modified: September 7, 2016
This is version 106 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.