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Protein

Putative electron transfer flavoprotein subunit YgcR

Gene

ygcR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

May play a role in a redox process.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processElectron transport, Transport
LigandFAD, Flavoprotein

Enzyme and pathway databases

BioCyciEcoCyc:G7436-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative electron transfer flavoprotein subunit YgcR
Gene namesi
Name:ygcR
Ordered Locus Names:b2770, JW5441
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13125. ygcR.

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Disruption phenotypei

Cells undergo an apoptotic-like death upon DNA damage characterized by membrane depolarization.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001679001 – 259Putative electron transfer flavoprotein subunit YgcRAdd BLAST259

Proteomic databases

PaxDbiQ46908.
PRIDEiQ46908.

Interactioni

Subunit structurei

YgcQ and YgcR form a heterodimer.Curated

Protein-protein interaction databases

BioGridi4262284. 16 interactors.
IntActiQ46908. 2 interactors.
STRINGi316385.ECDH10B_2938.

Structurei

3D structure databases

ProteinModelPortaliQ46908.
SMRiQ46908.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ETF beta-subunit/FixA family.Curated

Phylogenomic databases

eggNOGiENOG4106IKH. Bacteria.
COG2086. LUCA.
HOGENOMiHOG000124113.
InParanoidiQ46908.
PhylomeDBiQ46908.

Family and domain databases

CDDicd01714. ETF_beta. 1 hit.
Gene3Di3.40.50.620. 1 hit.
InterProiView protein in InterPro
IPR014730. ETF_a/b_N.
IPR012255. ETF_b.
IPR033948. ETF_beta_N.
IPR014729. Rossmann-like_a/b/a_fold.
PANTHERiPTHR21294. PTHR21294. 1 hit.
PfamiView protein in Pfam
PF01012. ETF. 1 hit.
PIRSFiPIRSF000090. Beta-ETF. 1 hit.
SMARTiView protein in SMART
SM00893. ETF. 1 hit.

Sequencei

Sequence statusi: Complete.

Q46908-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNILLAFKAE PDAGMLAEKE WQAAAQGKSG PDISLLRSLL GADEQAAAAL
60 70 80 90 100
LLAQRKNGTP MSLTALSMGD ERALHWLRYL MALGFEEAVL LETAADLRFA
110 120 130 140 150
PEFVARHIAE WQHQNPLDLI ITGCQSSEGQ NGQTPFLLAE MLGWPCFTQV
160 170 180 190 200
ERFTLDALFI TLEQRTEHGL RCCRVRLPAV IAVRQCGEVA LPVPGMRQRM
210 220 230 240 250
AAGKAEIIRK TVAAEMPAMQ CLQLARAEQR RGATLIDGQT VAEKAQKLWQ

DYLRQRMQP
Length:259
Mass (Da):28,720
Last modified:November 1, 1997 - v2
Checksum:iDB8E1E7203E79E84
GO

Sequence cautioni

The sequence AAA69280 differs from that shown. Reason: Frameshift at position 232.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69280.1. Frameshift.
U00096 Genomic DNA. Translation: AAC75812.2.
AP009048 Genomic DNA. Translation: BAE76847.1.
PIRiF65058.
RefSeqiNP_417250.4. NC_000913.3.
WP_001299652.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75812; AAC75812; b2770.
BAE76847; BAE76847; BAE76847.
GeneIDi947240.
KEGGiecj:JW5441.
eco:b2770.
PATRICifig|1411691.4.peg.3967.

Similar proteinsi

Entry informationi

Entry nameiYGCR_ECOLI
AccessioniPrimary (citable) accession number: Q46908
Secondary accession number(s): Q2MA59
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: August 30, 2017
This is version 106 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families