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Protein

Ferredoxin-like protein YgcO

Gene

ygcO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Could be a 3Fe-4S cluster-containing protein. Probably participates in a redox process with YgcN, YgcQ and YgcR.

GO - Molecular functioni

GO - Biological processi

  • DNA mediated transformation Source: EcoCyc
  • oxidation-reduction process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7433-MONOMER.
ECOL316407:JW2737-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ferredoxin-like protein YgcO
Gene namesi
Name:ygcO
Ordered Locus Names:b2767, JW2737
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13122. ygcO.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001592191 – 86Ferredoxin-like protein YgcOAdd BLAST86

Proteomic databases

PaxDbiQ46905.
PRIDEiQ46905.

Interactioni

Protein-protein interaction databases

BioGridi4262290. 25 interactors.
IntActiQ46905. 4 interactors.
STRINGi511145.b2767.

Structurei

3D structure databases

ProteinModelPortaliQ46905.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini45 – 744Fe-4S ferredoxin-typePROSITE-ProRule annotationAdd BLAST30

Sequence similaritiesi

Contains 1 4Fe-4S ferredoxin-type domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105WQV. Bacteria.
COG2440. LUCA.
HOGENOMiHOG000018925.
InParanoidiQ46905.
OMAiWLINACP.
PhylomeDBiQ46905.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR012206. Fd_FixX.
[Graphical view]
PIRSFiPIRSF036548. Fdx_FixX. 1 hit.
PROSITEiPS51379. 4FE4S_FER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q46905-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVARNLWRV ADAPHIVPAD SVERQTAERL INACPAGLFS LTPEGNLRID
60 70 80
YRSCLECGTC RLLCDESTLQ QWRYPPSGFG ITYRFG
Length:86
Mass (Da):9,662
Last modified:November 13, 2007 - v2
Checksum:iE7E8BA4B1244C0AA
GO

Sequence cautioni

The sequence AAA69277 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69277.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75809.2.
AP009048 Genomic DNA. Translation: BAE76844.1.
PIRiC65058.
RefSeqiNP_417247.2. NC_000913.3.
WP_000109529.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75809; AAC75809; b2767.
BAE76844; BAE76844; BAE76844.
GeneIDi945120.
KEGGiecj:JW2737.
eco:b2767.
PATRICi32120946. VBIEscCol129921_2865.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69277.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75809.2.
AP009048 Genomic DNA. Translation: BAE76844.1.
PIRiC65058.
RefSeqiNP_417247.2. NC_000913.3.
WP_000109529.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliQ46905.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262290. 25 interactors.
IntActiQ46905. 4 interactors.
STRINGi511145.b2767.

Proteomic databases

PaxDbiQ46905.
PRIDEiQ46905.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75809; AAC75809; b2767.
BAE76844; BAE76844; BAE76844.
GeneIDi945120.
KEGGiecj:JW2737.
eco:b2767.
PATRICi32120946. VBIEscCol129921_2865.

Organism-specific databases

EchoBASEiEB2923.
EcoGeneiEG13122. ygcO.

Phylogenomic databases

eggNOGiENOG4105WQV. Bacteria.
COG2440. LUCA.
HOGENOMiHOG000018925.
InParanoidiQ46905.
OMAiWLINACP.
PhylomeDBiQ46905.

Enzyme and pathway databases

BioCyciEcoCyc:G7433-MONOMER.
ECOL316407:JW2737-MONOMER.

Miscellaneous databases

PROiQ46905.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR012206. Fd_FixX.
[Graphical view]
PIRSFiPIRSF036548. Fdx_FixX. 1 hit.
PROSITEiPS51379. 4FE4S_FER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGCO_ECOLI
AccessioniPrimary (citable) accession number: Q46905
Secondary accession number(s): Q2MA62
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 13, 2007
Last modified: November 2, 2016
This is version 101 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.